DRSC/TRiP Functional Genomics Resources

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Protein Alignment bab1 and lov

DIOPT Version :9

Sequence 1:NP_728565.1 Gene:bab1 / 38116 FlyBaseID:FBgn0004870 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster


Alignment Length:1053 Identity:227/1053 - (21%)
Similarity:338/1053 - (32%) Gaps:384/1053 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SPTQQEEKRIKSEDRTSPTGGAKDEDKESQGHAV---AGGGGSSPVSSPQGRSSSVASPSSSSQQ 101
            :||........:...|.||......:......||   |....|.|.:.|.  ..::|.||:....
  Fly    52 TPTSDHAPMHSTPPTTPPTPPPLPLNMSQSASAVTEAATPENSLPATPPS--EGALAVPSAPQDH 114

  Fly   102 FCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPCQHPIV 166
            :.|||||:|.::...||.||:.:..|||||.|...|::|||||||||||:||.:.|||||:||::
  Fly   115 YSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVI 179

  Fly   167 IMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTHMEAATAAAAA------ 225
            :::|.....::|||:|||||||:|.|.::..|::..|.|:||||.:.:..|.....||:      
  Fly   180 VLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGM 244

  Fly   226 ----------------------ASSERMPSSPKESTSTS-----------RTEHDREREAEELLA 257
                                  .....|||:.....::|           ..|.||:.|:::.|.
  Fly   245 LDTSMLSSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDRDLESDQELG 309

  Fly   258 FMQP------EKKLRTSDWDPAELRLSPLERQQGRNVRKRRWPSADTIFNPPAP----------- 305
            ...|      .:..|.|...|.:..|:..:.:..:.|.|.............||           
  Fly   310 GSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQTVIKHELLERAERDQEEAPDQDNSQGEAEK 374

  Fly   306 --PSPLSSLI--AAERMELEQK---------------------------ERERQRD--------- 330
              .||..:|:  |.|:..::::                           |.|.::|         
  Fly   375 ISSSPAKTLVERAKEQKSMKEEGSDQPRSLNENHHQLELDDEDDDDQDHEEEEEQDIEELIHTTN 439

  Fly   331 ------------CSLMTPPPKPPMSSG------------------------STVGATRRLE---- 355
                        .:.|:|.|.|.:|.|                        |....:.:|:    
  Fly   440 ELRRQAAAAAANAAAMSPNPSPCLSDGPEDLCTTKKGKELISGPSSSADCESNNNNSSKLQDNNQ 504

  Fly   356 ------------------TAIHA-----------LDMPSPAATPGPLSRSSRPHSQSPQQQQAQQ 391
                              ||||.           |..|.|...|..|..|...|.::.:.|.   
  Fly   505 RIMLSLKDIRQLNANPNPTAIHTPTSCSGGNNGLLTFPPPGLRPPGLPDSPPCHMEALEAQM--- 566

  Fly   392 QGQLPLPLPLHPHHHASPAPHPSQTAGSAHHPASPAGDSRFPLGPAAAMAAARELSGLGPGPSAE 456
                          ||:.|...: .|||..||.... :.:..:..|||.|||..       ...|
  Fly   567 --------------HAAAAAAVA-AAGSGEHPFHHM-EHQMEMSLAAAAAAAAM-------HQRE 608

  Fly   457 PRLPPPPPHHHGG-----GGVG---GGGVGGGGAGGVGSGGGSSLADDLEIKPGIAEMIREEERA 513
            ||.|.....|:..     |.:|   .||..||..|..|.|.|.         ||.|...|.||..
  Fly   609 PRDPRDGRDHNAFASNLLGPMGMPPFGGHNGGHPGNSGPGNGC---------PGQAAHERLEESM 664

  Fly   514 KMMENS------------------------------------H-----AWMGATGSTLAADSYQY 537
            ..:...                                    |     .:.|.:.:......:.:
  Fly   665 NRLSKELGKEFGKEFGKEFGKEFGPASPMSLQGPFNAPDGPPHPPSPLPFPGMSSAMTLTPPHMF 729

  Fly   538 QLQSMW---------QKCWNTNQNLMHHMRFRER------------------------GPLKSWR 569
            .|.|..         .|.:|.   ||.....|:.                        ||.:||.
  Fly   730 GLDSPLGLFPPGIDPGKLYNP---LMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWT 791

  Fly   570 PETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSID---------GGPDLRPK 625
            ...:.||:..|..:.::.|||:|.:.|||.:.::|   |....|.|:.         .||.:   
  Fly   792 NTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMY---VRGKYGKSLKLEQLRKDCISGPPI--- 850

  Fly   626 GRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDESLAAHMPPYGRHSPAFPLQDLPLSYPGAS 690
                 :.:.:||....  .|..|....::.|:.:.:..:......|                |::
  Fly   851 -----EMLQMGIGGGS--GGSTKNEKSKERKEKEKDKNSMSSNGSG----------------GSA 892

  Fly   691 GALAGAPSSMACPNGSGPQTGVGVAGEQHMSQETAAAVAAVAHNIRQQMQMAAVPPGLFNLPPHP 755
            .:..|||:|     ||||....|..|                            |.|..:|    
  Fly   893 NSQGGAPTS-----GSGPMQHSGELG----------------------------PMGQLDL---- 920

  Fly   756 GVGGGVGNVPGAAGGRASISPALSSGSGPRHAPSPCGPAGL-------LPNLPPSMAVAL----- 808
                .:|...|..||..|.|......|.|....:|..|.|.       .|.||.||...|     
  Fly   921 ----DLGLPLGPPGGPRSNSSEPDLLSAPNALFNPFNPQGFYPDFSGGFPGLPLSMLNLLPPAER 981

  Fly   809 HHQQQQQAAHHHM 821
            ||   ..||.||:
  Fly   982 HH---AAAAMHHL 991

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bab1NP_728565.1 BTB 117..216 CDD:279045 51/98 (52%)
BTB 128..213 CDD:197585 46/84 (55%)
HTH_psq 569..614 CDD:283007 12/44 (27%)
lovNP_611994.3 BTB 130..225 CDD:279045 51/94 (54%)
BTB 141..226 CDD:197585 46/84 (55%)
HTH_psq 791..834 CDD:283007 13/45 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 69 1.000 Inparanoid score I5158
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.060

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