DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bab1 and psq

DIOPT Version :9

Sequence 1:NP_728565.1 Gene:bab1 / 38116 FlyBaseID:FBgn0004870 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster


Alignment Length:1246 Identity:263/1246 - (21%)
Similarity:397/1246 - (31%) Gaps:521/1246 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPCQHP 164
            |.|.|||||||..:|::|.||.::..||||||:|:..|:||||:||||||.|||.||.|.||:||
  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72

  Fly   165 IVIM-RDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTH-----MEAATAAA 223
            .:|: .|:.::|||.|::|:|||||:|::.::..|||.||.||::||.:...     .:||||..
  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATI 137

  Fly   224 AAASSER------------MPSSPKESTSTSRTEHDRER--------EAEELLAFMQPEKKL--- 265
            ..:.:.:            :|.:|..|....:..|.:::        :.:::.|..|.:::.   
  Fly   138 TVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQIN 202

  Fly   266 -----------------------------------RTSDWDPAELRLSPLERQQGRNVRKRRWPS 295
                                               :.:...|:.|:.:|      |..|.:|..|
  Fly   203 AALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTP------RKSRLKRSKS 261

  Fly   296 AD-------------------------------TIFNPPAPPSPLSSLI------------AAER 317
            .|                               ||......|:.:.||.            :.:.
  Fly   262 PDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGSGDD 326

  Fly   318 MELEQKERERQ------------------------------------------------------ 328
            .:.|..|.|..                                                      
  Fly   327 SDAEDHEHEHNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVASPASNSSSASNNA 391

  Fly   329 -----------------------RDCSLMTP-------------------PPKPPMSSGSTVGAT 351
                                   :|...||.                   .|:||..|.:.|..|
  Fly   392 AGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVT 456

  Fly   352 RRLETA--------------------------IHALDMPSP------------------------ 366
            ..::.:                          ||.||. ||                        
  Fly   457 EHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQ-SPMHSISHHHTGDESNSNLVQHIKSE 520

  Fly   367 -------AATPGPLSRSSRPHS--------QSPQQQQAQQQGQLPLPLPLHPHHHASPAPHPSQT 416
                   ||....||::.:.|:        |..||||.|||.|         |.||......||.
  Fly   521 VIEAKHLAAQHHALSQAQQQHAHHQAHQQHQQHQQQQHQQQQQ---------HLHAQQLLAQSQL 576

  Fly   417 AGSAHHPASPAGDSRFPLGPAAAMAAARELSGLGPG----------------PSA---EPRLPPP 462
            ..............:.....|||.|||..:.|...|                ||.   ||.:...
  Fly   577 QQQQQQQQQQQQHHQQQQQQAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIIT 641

  Fly   463 P-----------------------------------PHH------HG------GGGVGGGGVGGG 480
            |                                   ||:      ||      |.|.||.|.|||
  Fly   642 PEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGGG 706

  Fly   481 GAGGVGSGGGSSLADDLEIKPGIAEMIREEERAKMMENSHAWMGATGSTLAADSYQYQLQSMWQK 545
            .:||.|||.|....|.|                   :|.:..:     |.|:..|.....::||:
  Fly   707 MSGGAGSGSGEKALDAL-------------------KNQNMSL-----TKASAIYGIPSTTLWQR 747

  Fly   546 CWNTNQNLMHHMRF---RERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANR 607
            .        |.|..   ::.|..|||..:.:..|:.::....:|.::|::.:.||..|....|.|
  Fly   748 A--------HRMGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARR 804

  Fly   608 VHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDESLAAHMPP--- 669
            ....|....:..|.               .|..|.::..::.:...:| .::..|....:|.   
  Fly   805 EGIRLAAPFNAAPT---------------TWTPEDLERALEAIRAGNT-SVQKASAEFGIPTGTL 853

  Fly   670 YGRHSPAFPLQDLPLS----YPGASGALAGAPSSMACPNGSGPQTGVGVAGEQHMSQETAAAVAA 730
            |||    ...:.:.||    .|.:..|:..|.:|:.             .|:..::|      ||
  Fly   854 YGR----CKREGIELSRSNPTPWSEDAMNEALNSVR-------------VGQMSINQ------AA 895

  Fly   731 VAHNIRQQMQMAAVPPGLFNLPPHPGVGGGVGNVPGAA---------GGRASISPALSSGSGPRH 786
            :.:|:...........|.:::         |.|..|.|         |....|..:..:.....:
  Fly   896 IHYNLPYSSLYGRFKRGKYDV---------VANTSGVALLNTSGNTTGSIEIIEHSQENSQQFPY 951

  Fly   787 APSPCGPAGLLPNLPPSMAVALHHQQQQQA--AHHHMQQLHLQQQQAHLHHHQQQQQQQQQQHHQ 849
            :|||..|.      |...:...||...||.  ...||||        |:.|.||||||||||...
  Fly   952 SPSPHPPT------PQHHSTPQHHSSAQQGPPTPQHMQQ--------HVVHMQQQQQQQQQQSPH 1002

  Fly   850 GGHQVAHKSGFGASSSSSASSS-------SMGQHHAPKAKSSPLRSETPRLHSPLGDLGLDMASY 907
            .||...|......:|||....|       .:.|||     .:|.||  ..||:            
  Fly  1003 PGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHH-----GTPERS-XESLHA------------ 1049

  Fly   908 KREFSPSRLFAEDLAELVGAS----------VSSSSSSAAAATAPPERSAGA-ASAATGADAP-- 959
                          |.|:|::          |::|:|...||::.|..|..| .|..:.|..|  
  Fly  1050 --------------ATLMGSTGGGGGGGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPV 1100

  Fly   960 ----SSSSSGG 966
                ||:.|||
  Fly  1101 TASGSSAVSGG 1111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bab1NP_728565.1 BTB 117..216 CDD:279045 53/104 (51%)
BTB 128..213 CDD:197585 48/85 (56%)
HTH_psq 569..614 CDD:283007 9/44 (20%)
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 48/83 (58%)
HTH_psq 717..>747 CDD:283007 7/53 (13%)
HTH_psq 767..804 CDD:283007 7/36 (19%)
HTH_psq 821..866 CDD:283007 8/49 (16%)
HTH_psq 873..916 CDD:283007 9/61 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.100

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