Protein Alignment bab1 and psq

DIOPT Version :10

• Sequence 1: NP_728565.1
• Gene: bab1 / 38116
• FlyBaseID: FBgn0004870
• Length: 977
• Species: Drosophila melanogaster
• Sequence 2: NP_001369078.1
• Gene: psq / 36118
• FlyBaseID: FBgn0263102
• Length: 1170
• Species: Drosophila melanogaster
• Alignment Length: 1246
• Identity: 263/1246 - (21%)
• Similarity: 397/1246 - (31%)
• Gaps: 521/1246 - (41%)

  Fly   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPCQHP 164
            |.|.|||||||..:|::|.||.::..||||||:|:..|:||||:||||||.|||.||.|.||:||
  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72

  Fly   165 IVIM-RDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTH-----MEAATAAA 223
            .:|: .|:.::|||.|::|:|||||:|::.::..|||.||.||::||.:...     .:||||..
  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATI 137

  Fly   224 AAASSER------------MPSSPKESTSTSRTEHDRER--------EAEELLAFMQPEKKL--- 265
            ..:.:.:            :|.:|..|....:..|.:::        :.:::.|..|.:::.
  Fly   138 TVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQIN 202

  Fly   266 -----------------------------------RTSDWDPAELRLSPLERQQGRNVRKRRWPS 295
                                               :.:...|:.|:.:|      |..|.:|..|
  Fly   203 AALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTP------RKSRLKRSKS 261

  Fly   296 AD-------------------------------TIFNPPAPPSPLSSLI------------AAER 317
            .|                               ||......|:.:.||.            :.:.
  Fly   262 PDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGSGDD 326

  Fly   318 MELEQKERERQ------------------------------------------------------ 328
            .:.|..|.|..
  Fly   327 SDAEDHEHEHNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVASPASNSSSASNNA 391

  Fly   329 -----------------------RDCSLMTP-------------------PPKPPMSSGSTVGAT 351
                                   :|...||.                   .|:||..|.:.|..|
  Fly   392 AGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVT 456

  Fly   352 RRLETA--------------------------IHALDMPSP------------------------ 366
            ..::.:                          ||.||. ||
  Fly   457 EHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQ-SPMHSISHHHTGDESNSNLVQHIKSE 520

  Fly   367 -------AATPGPLSRSSRPHS--------QSPQQQQAQQQGQLPLPLPLHPHHHASPAPHPSQT 416
                   ||....||::.:.|:        |..||||.|||.|         |.||......||.
  Fly   521 VIEAKHLAAQHHALSQAQQQHAHHQAHQQHQQHQQQQHQQQQQ---------HLHAQQLLAQSQL 576

  Fly   417 AGSAHHPASPAGDSRFPLGPAAAMAAARELSGLGPG----------------PSA---EPRLPPP 462
            ..............:.....|||.|||..:.|...|                ||.   ||.:...
  Fly   577 QQQQQQQQQQQQHHQQQQQQAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIIT 641

  Fly   463 P-----------------------------------PHH------HG------GGGVGGGGVGGG 480
            |                                   ||:      ||      |.|.||.|.|||
  Fly   642 PEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGGG 706

  Fly   481 GAGGVGSGGGSSLADDLEIKPGIAEMIREEERAKMMENSHAWMGATGSTLAADSYQYQLQSMWQK 545
            .:||.|||.|....|.|                   :|.:..:     |.|:..|.....::||:
  Fly   707 MSGGAGSGSGEKALDAL-------------------KNQNMSL-----TKASAIYGIPSTTLWQR 747

  Fly   546 CWNTNQNLMHHMRF---RERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANR 607
            .        |.|..   ::.|..|||..:.:..|:.::....:|.::|::.:.||..|....|.|
  Fly   748 A--------HRMGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARR 804

  Fly   608 VHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDESLAAHMPP--- 669
            ....|....:..|.               .|..|.::..::.:...:| .::..|....:|.
  Fly   805 EGIRLAAPFNAAPT---------------TWTPEDLERALEAIRAGNT-SVQKASAEFGIPTGTL 853

  Fly   670 YGRHSPAFPLQDLPLS----YPGASGALAGAPSSMACPNGSGPQTGVGVAGEQHMSQETAAAVAA 730
            |||    ...:.:.||    .|.:..|:..|.:|:.             .|:..::|      ||
  Fly   854 YGR----CKREGIELSRSNPTPWSEDAMNEALNSVR-------------VGQMSINQ------AA 895

  Fly   731 VAHNIRQQMQMAAVPPGLFNLPPHPGVGGGVGNVPGAA---------GGRASISPALSSGSGPRH 786
            :.:|:...........|.:::         |.|..|.|         |....|..:..:.....:
  Fly   896 IHYNLPYSSLYGRFKRGKYDV---------VANTSGVALLNTSGNTTGSIEIIEHSQENSQQFPY 951

  Fly   787 APSPCGPAGLLPNLPPSMAVALHHQQQQQA--AHHHMQQLHLQQQQAHLHHHQQQQQQQQQQHHQ 849
            :|||..|.      |...:...||...||.  ...||||        |:.|.||||||||||...
  Fly   952 SPSPHPPT------PQHHSTPQHHSSAQQGPPTPQHMQQ--------HVVHMQQQQQQQQQQSPH 1002

  Fly   850 GGHQVAHKSGFGASSSSSASSS-------SMGQHHAPKAKSSPLRSETPRLHSPLGDLGLDMASY 907
            .||...|......:|||....|       .:.|||     .:|.|| ...||:
  Fly  1003 PGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHH-----GTPERS-XESLHA------------ 1049

  Fly   908 KREFSPSRLFAEDLAELVGAS----------VSSSSSSAAAATAPPERSAGA-ASAATGADAP-- 959
                          |.|:|::          |::|:|...||::.|..|..| .|..:.|..|
  Fly  1050 --------------ATLMGSTGGGGGGGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPV 1100

  Fly   960 ----SSSSSGG 966
                ||:.|||
  Fly  1101 TASGSSAVSGG 1111

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bab1	NP_728565.1	BTB_POZ_BAB-like	126..209	CDD:349624	48/83 (58%)
		HTH_psq	569..614	CDD:283007	9/44 (20%)
psq	NP_001369078.1	BTB_POZ_BAB-like	34..118	CDD:349624	48/83 (58%)
		HTH_psq	717..>747	CDD:283007	7/53 (13%)
		HTH_psq	767..804	CDD:283007	7/36 (19%)
		HTH_psq	821..866	CDD:283007	8/49 (16%)
		HTH_psq	873..916	CDD:283007	9/61 (15%)