DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp10 and UBP13

DIOPT Version :9

Sequence 1:NP_001261229.1 Gene:Usp10 / 38103 FlyBaseID:FBgn0052479 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001326292.1 Gene:UBP13 / 820364 AraportID:AT3G11910 Length:1115 Species:Arabidopsis thaliana


Alignment Length:612 Identity:119/612 - (19%)
Similarity:190/612 - (31%) Gaps:214/612 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   988 QQPSHPVLQLAP-----PQPAQVAAAAPVAQL--SSPPQNLP----------------------- 1022
            ||....:|...|     |||.:||...|.|..  :.||::.|                       
plant    11 QQEDEEMLVPNPDLVEGPQPMEVAQTDPAATAVENPPPEDPPSLKFTWTIPMFTRLNTRKHYSDV 75

  Fly  1023 ------------LPTAHQQSQLPAPVPAPTAPLVTPGALSYSAASAQAVPAPSP----------- 1064
                        .|..:....|...:....|..:..|...||..|...|...:.           
plant    76 FVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQ 140

  Fly  1065 --------ASASVKPLKP--EPPR--------------PVQQQLDEWTSKYAEYLTRHKTNLASI 1105
                    ...|..||..  ||.|              .|::.||.|:     |.::.:|...  
plant   141 FNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVLDYWS-----YDSKKETGFV-- 198

  Fly  1106 SLRPRGLTNRSNYCYINSILQALLGCSPFYNLLRSIPKQAAVLSEVKTPTVNAMMSFMTNFSSLP 1170
                 ||.|:...||:||:||.|.....|...:..:|     .:|...||.:..::..:.|    
plant   199 -----GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMP-----TTENDAPTASIPLALQSLF---- 249

  Fly  1171 SGLRLRLNNLNKG----SQSKGKDDFVGSDLQCDMAFEPTEIYKLWNDSREEHVEGRQEDAEEFL 1231
              .:|:.|:.:..    ::|.|.|.:                     ||..:|      |.:|..
plant   250 --YKLQYNDTSVATKELTKSFGWDTY---------------------DSFMQH------DVQELN 285

  Fly  1232 GYVLNKLNDEMLEVIKLIDKPTPQQNGQEPAEPEDGGDVWQMICNNRNKGSVTRQTDFGRTPVSD 1296
            ..:..||.|:|                                     ||:|...|      :..
plant   286 RVLCEKLEDKM-------------------------------------KGTVVEGT------IQK 307

  Fly  1297 IFRGELRSRLQ-REGEHSTDVIQPFFTLQLNIEKAASVKEALEILVGRDQLEGVTGSKTKQEVVA 1360
            :|.|...:.:: ...::.:...:.|:.|||:::....|..:.:..|..::|||    ..|.....
plant   308 LFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEG----DNKYHAEG 368

  Fly  1361 WQQMTLEK------LPVVLILHLKYF--DYRSDGCTKILKKVDFPVELKI---DAKILGSKKTSQ 1414
            ......:|      .|.||.|.||.|  |:..|...||..:.:||::|.:   |.:.|.......
plant   369 HDLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREDGRYLSPDADKS 433

  Fly  1415 KQRAYRLFAVVYHDGKEASKGHYITDVFHTGYSSWLRYDDSSVKPVSEKHVLQ------------ 1467
            .:..|.|.:|:.|.| ....|||...:..|....|.::||..|.....|..|:            
plant   434 VRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPQN 497

  Fly  1468 -PHTPRVPY----------LLYYRRSD 1483
             |.....|:          |:|.|.||
plant   498 NPGFNNPPFKFTKYSNAYMLVYIRESD 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp10NP_001261229.1 UCH 1109..1479 CDD:278850 81/408 (20%)
Peptidase_C19 1223..1480 CDD:239072 58/291 (20%)
UBP13NP_001326292.1 COG5077 46..1113 CDD:227409 108/577 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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