DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp10 and Nelf-A

DIOPT Version :9

Sequence 1:NP_001261229.1 Gene:Usp10 / 38103 FlyBaseID:FBgn0052479 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_001262804.1 Gene:Nelf-A / 42520 FlyBaseID:FBgn0038872 Length:1264 Species:Drosophila melanogaster


Alignment Length:1172 Identity:245/1172 - (20%)
Similarity:336/1172 - (28%) Gaps:512/1172 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SSASTTAGSSGAAGGGAA-TPISTPSTPQPSGVSSGPGNNGNNNNNHHNNTLVSPSGNNNLMTPV 69
            :.|::|:.:.|..|..|. |.:.||.||:    |:...||.||||            |||     
  Fly   383 AQATSTSVADGQPGKPAVETKLKTPRTPK----SAAKLNNNNNNN------------NNN----- 426

  Fly    70 QAFTPTGQPVYNPPVYMSAHGGHPHAGAHYPAMIPAPMPSNHVYVNNVTANVNLHGWPHGVPAYM 134
             :|..|.:.:.......|..           .::||.:....:..:..|..|::...|       
  Fly   427 -SFNHTPKRIKQEIEIKSEE-----------IIVPASIKLEKIETSPSTQRVSIQQQP------- 472

  Fly   135 PPGGQHHYIGHGDMPQEQGNTVMPHLQPVPINLAPQGGSPNPHGPRMGGGRMRERGRPRGGGPRR 199
                          |.....|  |||.   |..:||              :.:..|.....|...
  Fly   473 --------------PSLVQRT--PHLL---IRSSPQ--------------KRQNNGATTSAGTTT 504

  Fly   200 NDYHGPRHLQQQQLITLPPQQQLPPPDGANPGLQ-------LQPDQIGQQLAPPEAHMQHLQQYY 257
            ... |...::.::|...|    :....|.:|...       |.|.|: :|.|.|.|::       
  Fly   505 TTV-GNTTIKMEKLDIKP----MIRATGVSPSTSAGTTTTLLTPQQL-RQAANPLANL------- 556

  Fly   258 AAPPTYAYGPYPSPYFTPQHANVQ---PPPNATAAQQATGTPLFISGPLMYNPAWFNHGGYIYPM 319
                             |.:.:|:   ....|.||..||.:                        
  Fly   557 -----------------PNNISVKITSAKAKAAAAAAATSS------------------------ 580

  Fly   320 MHPAEYQYVPEDAGQPGVDERGAQPDGGMTQIWHQGPMYAEDFEALQQQQQQQQVAVHPNGGAVS 384
                                      |..||  .|.|      :.||.||..||  .||      
  Fly   581 --------------------------GSQTQ--SQQP------QTLQVQQAPQQ--SHP------ 603

  Fly   385 VADELNHNSS-----------------SLPSSETSSMISPNYPIYDPQMHEMQHQMGVMQIFDDG 432
               .|..|||                 :||||.||:..:...|                      
  Fly   604 ---PLLINSSTPVILASSPSAQRAKALALPSSSTSATTTTTIP---------------------- 643

  Fly   433 QMAALQPIHPGAGPLPQYEDELAECGAPPPGPIPVAWTAAMPLPPDAVQPALLPPPPHHILQQTS 497
             ..|::.:     ||.|.:.      |...||:                          |:.|| 
  Fly   644 -SQAIKTM-----PLSQLKT------ATNSGPV--------------------------IISQT- 669

  Fly   498 PLLIEQPAQLVQAQP-PQPPTPTPQQQQQQQHQEQTADKSLTQNNNEVVALDEKLANEKQQQIDF 561
               |.|||:..|.|. ........|||||||.|:|..                      .|||..
  Fly   670 ---IIQPAKRAQQQAGTSSAAAASQQQQQQQSQQQLL----------------------HQQIQQ 709

  Fly   562 HQQQQEQQQQQQQQQQQQQLHPLAQQQQQEEQQQPQQLQPL--------------------QTEK 606
            ..|||.|..||.||||.|.:....|||.|:.|||.||.||:                    |...
  Fly   710 QTQQQAQLPQQPQQQQTQYILATPQQQPQQIQQQQQQQQPILPTLTSFSHSRPMPQTTTLYQATT 774

  Fly   607 P------PTKVPNLVVATVAPQLQQPPLQQHQQQQ--------------TSPVVVSPKQQ----- 646
            |      |||:  |:..:.:..:...||:|.|.||              ||..||||.|.     
  Fly   775 PSGSGQTPTKI--LLKTSGSSSVVMTPLRQAQPQQATAVVSSNPPPLVATSAAVVSPGQTTLNIQ 837

  Fly   647 -----------QQQSQAAHQNSYHDQHPLPQQQQPQQQQPQPQRKPSQQYNQAQQQQVRRKYSSE 700
                       |..||||.|     ||   .|.|.|||||.||..........||.::       
  Fly   838 NVQLPNRPVTIQPASQAAQQ-----QH---MQAQLQQQQPHPQHTIVANTTATQQPKL------- 887

  Fly   701 YNHHHHQHGSSDTGIQTTKTMSWTNSAQHKKSTQSVSVTASPN---------------------- 743
                      |...:|.|..:..:.     .|..:||.|:..|                      
  Fly   888 ----------SQVLMQPTAAVGTSG-----VSALNVSPTSGKNKTIILTQKGVILRNIGGDMYQQ 937

  Fly   744 ----SVNNGPGVG-------AAGKANYSHTTKTFTNQQHYQQ-----------------QHYHTQ 780
                :|.|..|:|       .||..:...||.:...|...||                 ||...|
  Fly   938 IPISNVGNMQGLGGTTLMTTTAGPPSLVKTTPSSGVQLQQQQSGKQILPTLIPTSSLGGQHVIVQ 1002

  Fly   781 NSYNNNSSGGGSSSNSSSSSSNNQPQVRNY--GTMKMPSSPVAWTAPTPERKNSQQAAAAP---- 839
            .....|..|      :|...:..:|.:.|.  |...:|........| .::....|..|||    
  Fly  1003 QQQPTNVIG------NSQQQTIIRPVMTNVGGGLTTLPQGLTLIQRP-GQQPQLVQVQAAPGSTQ 1060

  Fly   840 --------AAATAS----------------AAPVAITTVTTSTAS----ITATPNQFQPETGSSS 876
                    .||.||                .||.....:.|||.|    ....||...|.|    
  Fly  1061 RTIITQSNTAAAASQQQPRQQQQQILVQHKPAPTLQQRLVTSTTSGGQGQQGNPNAGLPRT---- 1121

  Fly   877 ASPAVAAAQQQQPAAQQHAQAAQTGAAAAPSKSHSNYASSKKHQSYEPVVLSSVVATSSSA---- 937
            ....|.|.|||||   |..||.|..:..||.:...:.::...|:::|....::.|:....|    
  Fly  1122 VQVQVQAQQQQQP---QQQQATQQQSQQAPQRRGLSLSNEHVHKAHEMFRKANRVSRPDKALILG 1183

  Fly   938 -------NPQPQLNLAPPAPPASQNSSDSSQLSWASLFASNKPVAKVAPYEASKIAQQQPSHPVL 995
                   ||:|                            :|:.|..:...|..:..||...|..|
  Fly  1184 FMAGLRENPRP----------------------------NNENVLVIKLGETEEKVQQDNGHTAL 1220

  Fly   996 QL 997
            .|
  Fly  1221 CL 1222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp10NP_001261229.1 UCH 1109..1479 CDD:278850
Peptidase_C19 1223..1480 CDD:239072
Nelf-ANP_001262804.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13328
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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