DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp10 and DUBAI

DIOPT Version :9

Sequence 1:NP_001261229.1 Gene:Usp10 / 38103 FlyBaseID:FBgn0052479 Length:1517 Species:Drosophila melanogaster
Sequence 2:NP_610784.1 Gene:DUBAI / 36361 FlyBaseID:FBgn0033738 Length:852 Species:Drosophila melanogaster


Alignment Length:881 Identity:181/881 - (20%)
Similarity:280/881 - (31%) Gaps:272/881 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   785 NNSSGGGSSSNSSSSSSNNQPQVRNYGTMKMPSSPVAWTAPTPERKNSQQAAAAPAAATASAAPV 849
            |||..|.::|:::..:.|..|.    ....|.::.:|         |:::........|.|.|..
  Fly     6 NNSEAGDNASDNAGGAGNGIPP----NAKPMSANGMA---------NAEENVLPKGMDTGSPAGE 57

  Fly   850 AITTVTTSTASITATPNQFQ----PETGSSSAS----PAVAAAQQQQP----AAQQHAQAAQTGA 902
            ::.:..:....|.|.....|    ||.|.:..:    ..|..|:.|.|    ..:......|.||
  Fly    58 SLNSNRSGKRDIKALLAYLQSIDMPEQGHNVMAICERVIVDLARLQIPRGASCPRLKEDVCQVGA 122

  Fly   903 AAAPSKSHSNYASSKKHQSYEPVVLSSVVATSSSANPQPQLNLA-------------PPAPPASQ 954
            ..|.       .:.|.||.:...|:..:: |.|...|.|...:|             .......|
  Fly   123 FLAT-------RNEKFHQMFYLRVVYELI-TKSPFEPPPSCAVAIVFQLFDSTQILEAVHSLLEQ 179

  Fly   955 NSSDSS--------------------------------------------------QLSWASLFA 969
            |..|||                                                  :|....:|.
  Fly   180 NVQDSSIKKTVNLLCDWITYCTFCSTLNLWVLALLKGLRDQGKMALLDEIAMDNIEKLFHVMIFP 244

  Fly   970 SNKPVAKVAPYEASKIAQQQPS--HPVLQLAPPQPAQVAAAAPVAQLSSPPQNLPLPTAHQQSQL 1032
            :.:..|....:.......|.|.  |.:|...|      .....|...|:....:.|.|.....||
  Fly   245 ALRQKAAPVVFHMLSTINQTPEVFHKILPRIP------RVLQYVKNQSTTMDEIGLETKKCLQQL 303

  Fly  1033 PAPVPAPTAPLVTPGALSYSAASAQAVPAPSPASASVKPLKPEPPRPVQQQLDEWTSKYAEYLTR 1097
            .....|..........|..:...|.....|||...::.....|..:|       |..:.|..   
  Fly   304 VDLTSALMLRFYDQDELYVATKKALQTYEPSPNCVALAKAMHENAQP-------WGRRNARV--- 358

  Fly  1098 HKTNLASISLRPRGLTNRSNYCYINSILQALLGCSPFYNLLRSIPKQAAVLSEVKTPTVNAMMSF 1162
                         ||.|..|.||:||:||||...|.|...:..|...:.:|.:|:...  |:|..
  Fly   359 -------------GLVNLGNTCYMNSVLQALAMTSDFSRQILLIECNSVLLMKVQQQI--ALMHH 408

  Fly  1163 MTNFSSLPSGLRLRLNNLNKGSQSKGKDDFVGSDLQCDMAFEPTEIYKLWNDSREEHVEGRQEDA 1227
            ...:...||    |:.|..:                 ..:|.|                |.|:|:
  Fly   409 SLRYELTPS----RVLNATR-----------------PPSFTP----------------GLQQDS 436

  Fly  1228 EEFLGYVLNKLND--------------------EMLEVIKLID---------------------- 1250
            .|||||:|:.|::                    |:.:|..|:.                      
  Fly   437 SEFLGYLLDLLHEHEINSSSVTGHSVGPPKTGREVDDVPALLSEDILSSGVIPYNSKDHELSSGS 501

  Fly  1251 -------KPTPQQNGQEPAEPEDGGDVWQMICNNRNKGSVTRQTDFGRTP--VSDIFRGELRS-- 1304
                   ||||    ..||.|....:      ..:.:|   :|.|..:.|  :...|.|:|.:  
  Fly   502 NSDNCNHKPTP----TPPATPTKATN------GLKQQG---QQVDQAKPPSTIDKTFAGKLSTTY 553

  Fly  1305 RLQREGEHSTDVIQPFFTLQLNIEKAA--------SVKEALEILVGRDQLEGVTG---SKTKQEV 1358
            |....|..|.:. ..|..|||:.....        ||::.:|.....::|:|...   .:.|:..
  Fly   554 RCLNCGWESRNE-DSFRELQLSFPDDKEDCGATNYSVQDLIEYYCSPEKLDGDNQYFCPQCKKLC 617

  Fly  1359 VAWQQMTLEKLPVVLILHLKYFDY--RSDGCTKILKKV--DFPVELKIDAK-ILGSKKTSQKQRA 1418
            .|.:.:.:.:.|..|||.||.|.|  :....||::.||  |..|.:|:.|| .|....|..    
  Fly   618 DAERHIGVTQAPKNLILTLKQFKYDQKYHFRTKLMHKVFHDESVTVKMSAKDSLQEMSTVH---- 678

  Fly  1419 YRLFAVVYHDGKEASKGHYITDVFHTGYSSWLRYDDSSV---KPVSEKHVLQPHTPRVPYLLYYR 1480
            |.|:|.|.|.|.....|||.|...... .:|.:::|:.|   || .|.|.|.  :|..||:|:|:
  Fly   679 YDLYAGVVHAGYSMDSGHYFTFAADQA-KNWYKFNDNVVTHSKP-EEMHNLT--SPNTPYILFYK 739

  Fly  1481 RSDTLPPQQQQTQQQNGGGSGGVVGSSSSSSNAGDN 1516
            ...            :...|..|..|.|||..:|.|
  Fly   740 MCG------------HSNESNSVTASCSSSMVSGSN 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp10NP_001261229.1 UCH 1109..1479 CDD:278850 107/441 (24%)
Peptidase_C19 1223..1480 CDD:239072 81/328 (25%)
DUBAINP_610784.1 UCH 358..738 CDD:278850 107/456 (23%)
Peptidase_C19H 359..739 CDD:239129 107/440 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456883
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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