DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12502 and Tmem200c

DIOPT Version :9

Sequence 1:NP_001286893.1 Gene:CG12502 / 38102 FlyBaseID:FBgn0035171 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001238855.1 Gene:Tmem200c / 501201 RGDID:1561734 Length:635 Species:Rattus norvegicus


Alignment Length:741 Identity:147/741 - (19%)
Similarity:218/741 - (29%) Gaps:285/741 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KRKHSLGNLRRAHPASGATWNVQVVRGKMSSKCLWHACRALILGLTLMLLGAGMATLGYYADHLS 76
            |||......|:.        :|.||:||: ..|......|| .|:.::|:|..||.:||:.    
  Rat    26 KRKRKAKKRRKN--------DVVVVKGKL-KLCSISGLIAL-CGILVLLVGIAMAVVGYWP---- 76

  Fly    77 MGSELRGNVTVRVKNDLKGFHLNNFAYVGPIVMGFGG---FIVVASCVMTFEARDSAAKVVPARL 138
                 :.|...|                       ||   |:.|.|...|..|.:|::       
  Rat    77 -----KANAANR-----------------------GGSKQFLPVGSIHRTGAASNSSS------- 106

  Fly   139 RAGGGGSSKNPSRSNQGSSASQRRGMGAQYQSSRWDQHFGVFRSSPGDPHQQPQTACISTTHPHQ 203
                  .:|||::::.|:..                   ||..||.|.|...|.....:|:....
  Rat   107 ------GNKNPAKNHSGTPG-------------------GVNSSSVGGPRSSPPARTAATSSSSS 146

  Fly   204 HSHPQQPFDREALTAELVQFSRSLSASNRFCPQWRRLSGAGSAPDLSGSHAHANTTN-------- 260
            .|                  |.|.|.|..|.  :|..||          :.|::...        
  Rat   147 SS------------------SSSSSTSVGFF--FRIFSG----------YLHSDKLKVFGPLIMG 181

  Fly   261 -------STNATNHQN---PTTTVTTN--YYNLLSLNRLSPLDWELYCSHRRHRRHHHRHSHHHH 313
                   ..||..|:|   .|..:...  |..::.::.|...|.....:......          
  Rat   182 IGIFLFICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAA---------- 236

  Fly   314 HHHHKSSSSSVRRVRP-------------------VRPGLGAGS----------------QPSG- 342
                .|||::.....|                   ::||..|||                .|:| 
  Rat   237 ----ASSSAAAPGSAPPGAAPLNGFLNYVQSRGLELKPGSCAGSADAFGAAAMLARGSWPHPAGL 297

  Fly   343 GGGGGGGGGAGS----SSSARIISNSSSLIQ------------RATRECSLLQPPAASRVYWQAS 391
            ||||.|...|||    :||.|......||.:            ...|..::....||:.....|:
  Rat   298 GGGGSGTREAGSPPDLASSPRCPREPPSLTEAVYSIYRERSSGAGRRRTTVAAVAAATATVTAAA 362

  Fly   392 SFDGGSNHPP-----------------GLGMSSGA----EKRSERNKRSDTAKRHVLSRQRPIEQ 435
            |  |||:..|                 |..:|:.|    ....:|::.|:.|.   .|..||..:
  Rat   363 S--GGSSPAPCSPTGSWGRQSTASSLVGSSLSAFALLPLHGDRDRDRDSEGAS---CSWHRPPGE 422

  Fly   436 EEARDHSRSPLGHRRNSTMSD---SSYSGRW--------------------------TARCASMA 471
            ..:||..|..|    :.:::|   :....||                          |.|.|:..
  Rat   423 RGSRDLPRGEL----DLSLTDLRGAEGGARWASGEPEEPEGGTTACTARGQGRRLPRTGRYAAWR 483

  Fly   472 SR-TSSIESRRVQVDLHSPEVMPKSILRSPKRYSSGPSATPSVEKEFRSQLSVCSEPPPPVRQLS 535
            .| ||.:...|..   .|||..|............|..||||        |.:..|..|.||:.|
  Rat   484 RRSTSGLPEYRAP---PSPEPPPSGFAADLDSGPPGTVATPS--------LPLRPEDSPGVRRDS 537

  Fly   536 GQSSMEPAVPEESLDQSEEQEETTQPKASYEEITELQHHTSSLPPKKAR------PGFLPLARSE 594
            ..|            ||::|..:.:   .|..:.|......|:....||      ....|.....
  Rat   538 HSS------------QSDDQSSSNK---GYTPLREADTSVESVVDVVARKRLDCEAATDPSTEHS 587

  Fly   595 QEEDPRPVANPLYRSNSSRQFYRPKK 620
            ..|.|.|....:......|||...:|
  Rat   588 SPEGPSPEPTRVELHTGQRQFTNKEK 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12502NP_001286893.1 DUF2371 <65..137 CDD:287186 14/74 (19%)
Tmem200cNP_001238855.1 DUF2371 14..208 CDD:287186 56/285 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340961
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4823
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR31815
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

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