DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr20 and l1camb

DIOPT Version :9

Sequence 1:NP_612066.1 Gene:dpr20 / 38101 FlyBaseID:FBgn0035170 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_571458.1 Gene:l1camb / 30656 ZFINID:ZDB-GENE-980526-512 Length:1269 Species:Danio rerio


Alignment Length:616 Identity:119/616 - (19%)
Similarity:211/616 - (34%) Gaps:205/616 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PAARTRPRTKSTTDATKFSSSRGDLHLDCAVPNLIRLLLLIATIMGSGLVQAKTIY--------- 61
            |..:::|       |.:....|..|||         |||.::.......:|....|         
Zfish     2 PPVQSQP-------AGRRGQKRTHLHL---------LLLFLSAAQTHAYIQIPHDYTYNKLKQAP 50

  Fly    62 --------------DSVNMIQSLDALVEP----------RETTKVPLQTTPATP-PTAHAHIH-- 99
                          |.||:  :.:|..:|          ::..:|..::...|| ||...|.:  
Zfish    51 EFTTQPVPHTAFSLDDVNL--ACEASGDPSPSFRWVKDGKQFGEVLSESGTLTPHPTMDLHFYQG 113

  Fly   100 -------NQVSTLRSSYEDSDDGVDGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQAGSGTV- 156
                   |::.|..|:             :....|..|..|.:....|.:     :.:.|...| 
Zfish   114 TYRCYAANELGTAVSN-------------LVHLTTEPVPSLAKVKKQKRR-----AYEVGESAVL 160

  Fly   157 ---SPKSSPDSSGHKKNASFQQIG-------SQNVNALVPATVATTSSGLPSSS----NASLATP 207
               .||||.....|..:..|..|.       |::.|......:|..|....:.:    |||:..|
Zfish   161 RCNPPKSSVTPKIHWMDMQFHHIPLNERVTISRDGNLYFANLIANDSRDDYTCNAHYINASIILP 225

  Fly   208 TEPAR---NRSTGLVRNSAVKVDSKHP--------LSKGQ-------KTDAPMLNYIFDTFSSAN 254
            .||..   ..|..:|:|...|:  .||        :.:||       ....|.....:|...||.
Zfish   226 KEPMSIYVTPSNSVVKNRRAKL--HHPAGARSSYLVLRGQTLTLECIPEGLPTPEVHWDRIDSAL 288

  Fly   255 KHHHHDQRYGPHF---------EDVQRIGQATN----------LTVQA---------------GS 285
            ..:...:.|...:         :|.:.:..|.|          :||:|               |.
Zfish   289 SPNRTKKLYNNRWLQIDNVLESDDGEYVCTARNSENSVKHHYTVTVEAAPYWTRRPEEHLYAPGE 353

  Fly   286 SIHLNCRISLLQDKTVSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKIT 350
            ::.|:|:...:....::|..:.....|.|                .|.|.::     ::.:|.::
Zfish   354 TVRLDCQADGIPAPNITWSINGVPVSGTD----------------VDPRRRV-----SSGKLILS 397

  Fly   351 NVKKDDEAIYECQ-ISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEIDS--TLQLSCVVRN 412
            ||:..|.|:|:|: ::.|...:|..::||    |.:..::..| .|:.|:..:  |:.|.|  |.
Zfish   398 NVEFSDTAVYQCEAVNKHGSILINTHVHV----VELPAQILTP-DERLYQATAGQTVMLDC--RT 455

  Fly   413 VAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGANSTLSIAKISKTDSGNYTCSISEFQ--- 474
            .......:.|:.:|:|         .::....:....|.:|.|:.:|:.||..||||:||..   
Zfish   456 FGSPLPKIHWEILDSI---------PALSNAKISQMTNGSLKISNVSEEDSNRYTCSVSETNKSI 511

  Fly   475 -------NFTIVV------HILNGESFAELH 492
                   |.|.:|      |::.| |.|.||
Zfish   512 SAELEVLNRTKIVGPPQNLHVIRG-SDAILH 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr20NP_612066.1 IG_like 278..365 CDD:214653 19/112 (17%)
Ig 279..378 CDD:299845 20/114 (18%)
Ig 400..471 CDD:299845 17/72 (24%)
IG_like 402..480 CDD:214653 21/89 (24%)
l1cambNP_571458.1 Ig 69..133 CDD:299845 11/78 (14%)
Ig 140..231 CDD:299845 21/95 (22%)
IG_like 255..334 CDD:214653 10/78 (13%)
Ig3_L1-CAM 265..335 CDD:143284 9/69 (13%)
IG_like 344..426 CDD:214653 17/102 (17%)
Ig 352..427 CDD:299845 19/99 (19%)
IG_like 441..517 CDD:214653 20/86 (23%)
IGc2 446..505 CDD:197706 17/69 (25%)
I-set 522..607 CDD:254352 7/21 (33%)
IGc2 535..595 CDD:197706 5/8 (63%)
FN3 616..706 CDD:238020
FN3 719..798 CDD:214495
FN3 817..921 CDD:238020
FN3 926..1014 CDD:238020
FN3 1025..>1095 CDD:238020
Bravo_FIGEY 1148..1233 CDD:290593
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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