DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr20 and rig-4

DIOPT Version :9

Sequence 1:NP_612066.1 Gene:dpr20 / 38101 FlyBaseID:FBgn0035170 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:527 Identity:105/527 - (19%)
Similarity:161/527 - (30%) Gaps:207/527 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 TPPTAHAHIHNQVSTLRSSYEDSDDGVD-----------GDYVIPESQT--------STVAILDQ 135
            :||          |.:||.|.|..|..|           |.|.:....|        .:.:.:..
 Worm   105 SPP----------SMVRSKYLDDFDASDESVQYEVTTGVGRYFVLRRPTLLASRNLDISYSWIKD 159

  Fly   136 DSSMKGQDMESLSLQAGSGTVSPKSSPDSSGHKKNAS---FQQIGSQ--NV--NALVPATVATTS 193
            ||.....|........|:..|:.....|...:|..||   .::|.|:  ||  |.|.|:...|.|
 Worm   160 DSHQVTPDATHFVTSDGNLVVTGVKRDDFGAYKLMASSDDLKEIVSKEYNVRDNGLSPSLQNTLS 224

  Fly   194 ------------SGLPSSSNASLAT---PTEPARNR--------------STGLVRNSAVKVDSK 229
                        |.||........|   ..:..|.|              .|..:.|..:.:.:.
 Worm   225 IVYFPTDRTIIESTLPHDEIFDCVTSFGSKDDVRIRWFLNGQQISGSEVGMTTTLNNRRLIISNP 289

  Fly   230 HPLSKGQ-----KTDAPM-----LNYIFDTFSSANKHHHHDQRYGPHFEDVQRIGQATNLTVQAG 284
            ...::|:     :.||.|     ....:.||.|.           |..:|:....|.|     .|
 Worm   290 SSFTRGEHKLECRADAAMGRTSDQKSAYMTFISR-----------PILKDLPNEIQKT-----VG 338

  Fly   285 SSIHLNCRISLLQDKTVSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKI 349
            ||:.|.|.:.......:.|.:         ||       :.|.|..|              :|.|
 Worm   339 SSLSLKCSVKKKSSMDIKWYK---------NG-------LMMTTQRG--------------KLTI 373

  Fly   350 TNVKKDDEAIYECQ---------------------------------------ISTHPPRVIQIN 375
            ..:|:||..:|:|:                                       :.|.|||     
 Worm   374 DRIKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPPPR----- 433

  Fly   376 LHVNAPKVMIVDEVGDPLQEKYYEIDSTLQLS-----------------CVVRNVAMTSSV---V 420
                  |:...|  ....||:.:...|.|:.|                 .::...|.|.|.   :
 Worm   434 ------KLKFFD--NSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNI 490

  Fly   421 FWKHMDNILN-YDVTRGGVSVKTELMEDGANSTLSIAKISKTDSGNYTCSISEFQNFTIVVHI-L 483
            .|     :|| :::...  :||.:|..||    |:|..|.|:|.|.|||.||. .|.....:: :
 Worm   491 IW-----LLNGHEIQTD--NVKYDLTNDG----LAIHDIRKSDEGEYTCEISG-SNVKATANVQV 543

  Fly   484 NGESFAE 490
            ||:|..|
 Worm   544 NGDSLIE 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr20NP_612066.1 IG_like 278..365 CDD:214653 18/125 (14%)
Ig 279..378 CDD:299845 22/137 (16%)
Ig 400..471 CDD:299845 23/91 (25%)
IG_like 402..480 CDD:214653 26/98 (27%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 20/106 (19%)
IGc2 338..393 CDD:197706 18/84 (21%)
I-set 459..543 CDD:254352 23/95 (24%)
IGc2 478..534 CDD:197706 22/67 (33%)
IG_like 553..639 CDD:214653
Ig 564..635 CDD:143165
FN3 643..747 CDD:238020
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.