DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr20 and lsamp

DIOPT Version :9

Sequence 1:NP_612066.1 Gene:dpr20 / 38101 FlyBaseID:FBgn0035170 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:197 Identity:41/197 - (20%)
Similarity:76/197 - (38%) Gaps:40/197 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 NLTVQAGSSIHLNCRISLLQDKT--VSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQ 340
            |:||:.|.:..|.|   .::|::  |:|:            |...::..|...::.|.|.::|.:
 Frog    40 NITVRQGDTAILRC---FVEDRSSRVAWL------------NRSGIIFAGDDKWSLDPRVELEKR 89

  Fly   341 YPNNWRLKITNVKKDDEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEI----D 401
            ....:.|:|..|...||..|.|.:.|        ..|....:|.::.:|...:.....:|    .
 Frog    90 SLLEYSLRIQKVDVSDEGPYTCSVQT--------KQHTKTTQVYLIVQVPPKISNISADITVNEG 146

  Fly   402 STLQLSCVVRNVAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGANSTLSIAKISKTDSGNY 466
            |.:.|.|:.  ......::.|:|:       ....|.|...:.  :|....|.|..|::..||.|
 Frog   147 SNVTLMCIA--YGRPEPMITWRHL-------TPTAGTSPARDF--EGEEEFLEIQGITREQSGRY 200

  Fly   467 TC 468
            .|
 Frog   201 EC 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr20NP_612066.1 IG_like 278..365 CDD:214653 21/88 (24%)
Ig 279..378 CDD:299845 21/100 (21%)
Ig 400..471 CDD:299845 16/73 (22%)
IG_like 402..480 CDD:214653 15/67 (22%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 24/110 (22%)
FR1 38..54 CDD:409353 6/16 (38%)
Ig strand A' 39..45 CDD:409353 3/4 (75%)
Ig strand B 47..55 CDD:409353 2/10 (20%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 2/18 (11%)
Ig strand C 60..66 CDD:409353 2/17 (12%)
CDR2 68..78 CDD:409353 1/9 (11%)
Ig strand C' 70..73 CDD:409353 0/2 (0%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 10/34 (29%)
Ig strand D 83..90 CDD:409353 2/6 (33%)
Ig strand E 93..99 CDD:409353 1/5 (20%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 1/11 (9%)
Ig strand G 119..128 CDD:409353 1/8 (13%)
FR4 121..128 CDD:409353 1/6 (17%)
Ig_3 131..206 CDD:404760 16/83 (19%)
Ig strand A' 138..143 CDD:409353 1/4 (25%)
Ig strand B 149..156 CDD:409353 2/8 (25%)
Ig strand C 162..167 CDD:409353 1/4 (25%)
Ig strand C' 173..175 CDD:409353 1/1 (100%)
Ig strand E 185..191 CDD:409353 2/5 (40%)
Ig strand F 198..205 CDD:409353 3/5 (60%)
Ig strand G 212..220 CDD:409353
Ig_3 223..302 CDD:404760
putative Ig strand A 224..230 CDD:409353
Ig strand B 240..244 CDD:409353
Ig strand C 253..257 CDD:409353
Ig strand E 281..285 CDD:409353
Ig strand F 295..300 CDD:409353
Ig strand G 308..311 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.