| Sequence 1: | NP_728546.1 | Gene: | Sf3b3 / 38093 | FlyBaseID: | FBgn0035162 | Length: | 1227 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_598714.1 | Gene: | Sf3b3 / 101943 | MGIID: | 1289341 | Length: | 1217 | Species: | Mus musculus |
| Alignment Length: | 1227 | Identity: | 921/1227 - (75%) |
|---|---|---|---|
| Similarity: | 1065/1227 - (86%) | Gaps: | 10/1227 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 1 MYLYNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKVHTLLSTEIFGCVRAL 65
Fly 66 MAFRLTGGTKDYIVVGSDSGRIVILEYNPSKNALEKVHQETFGKSGCRRIVPGQYFAIDPKGRAV 130
Fly 131 MIGAVEKQKLAYIMNRDTQARLTISSPLEAHKSNTLTYHMVGVDVGFDNPMFACLEIDYEEADMD 195
Fly 196 PSGDAAQRTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLVSVPGGNDGPSGVLICSENYLTYKN 260
Fly 261 LGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSMYFFLLQTEQGDIFKITLETDDDVVSEI 325
Fly 326 KLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDDEPEFSSAMPLEEGETFFFAPR 390
Fly 391 ALKNLVLVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGN 455
Fly 456 PNAVWTVKKRADDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLCCAALGDDALVQVY 520
Fly 521 PDGIRHIRSDKRVNEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTGELNEYTERSEMPA 585
Fly 586 EIMCMALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTES 650
Fly 651 TTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKM 715
Fly 716 QGSEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLG 780
Fly 781 AVFNQVAFPLQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDEERELAR 845
Fly 846 EMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSVPLTQNEAIMSMAMLKFSIAAD 910
Fly 911 GRYYLAVGIAKDLQLNPRISQGGCIDIYKIDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGR 975
Fly 976 MLRIYDFGKKKMLRKCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHP 1040
Fly 1041 RWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDRGLLSGASQKSENICSF 1105
Fly 1106 HVGEIIMSLQKATLIPGGSEALIYATLSGTVGAFVPFTSREDYDFFQHLEMHMRNENPPLCGRDH 1170
Fly 1171 LSYRSSYYPVKNVLDGDLCEQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF 1227 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Sf3b3 | NP_728546.1 | MMS1_N | 76..592 | CDD:402179 | 440/515 (85%) |
| CPSF_A | 872..1194 | CDD:397339 | 199/321 (62%) | ||
| Sf3b3 | NP_598714.1 | MMS1_N | 76..592 | CDD:402179 | 440/515 (85%) |
| Interaction with PHF5A, SF3B1 and SF3B5. /evidence=ECO:0000250|UniProtKB:Q15393 | 105..119 | 13/13 (100%) | |||
| Interaction with PHF5A, SF3B1 and SF3B5. /evidence=ECO:0000250|UniProtKB:Q15393 | 145..168 | 19/22 (86%) | |||
| Interaction with SF3B1 and SF3B5. /evidence=ECO:0000250|UniProtKB:Q15393 | 193..231 | 32/37 (86%) | |||
| Interaction with SF3B1 and SF3B5. /evidence=ECO:0000250|UniProtKB:Q15393 | 786..804 | 15/17 (88%) | |||
| CPSF_A | 863..1182 | CDD:397339 | 195/318 (61%) | ||
| Interaction with SF3B1. /evidence=ECO:0000250|UniProtKB:Q15393 | 1028..1049 | 16/20 (80%) | |||
| Interaction with SF3B5. /evidence=ECO:0000250|UniProtKB:Q15393 | 1100..1123 | 14/22 (64%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C167850533 | |
| Domainoid | 1 | 1.000 | 918 | 1.000 | Domainoid score | I43 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG1898 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H6579 | |
| Inparanoid | 1 | 1.050 | 1885 | 1.000 | Inparanoid score | I59 |
| Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S1325 |
| OMA | 1 | 1.010 | - | - | QHG54483 | |
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 1 | 1.000 | - | - | FOG0004388 | |
| OrthoInspector | 1 | 1.000 | - | - | oto92550 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_102496 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR10644 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1253 |
| SonicParanoid | 1 | 1.000 | - | - | X3106 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 16 | 15.740 | |||||