DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13898 and cabp1a

DIOPT Version :9

Sequence 1:NP_612058.1 Gene:CG13898 / 38092 FlyBaseID:FBgn0035161 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001315294.1 Gene:cabp1a / 449789 ZFINID:ZDB-GENE-041010-36 Length:379 Species:Danio rerio


Alignment Length:148 Identity:44/148 - (29%)
Similarity:82/148 - (55%) Gaps:7/148 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QDYILANDDLQDICEAFELCDPEKTGRIRADDLGEVMRTLGQNHTESEIYRYSEGLEGDVNGYIQ 68
            |:..|..:::.::.:||:..|.:|.|.|...|||..|||:|...||.|:...|:.:..::.|::.
Zfish   227 QNRELRPEEIDELRDAFKEFDKDKDGFISCKDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVD 291

  Fly    69 LTDFIDLM-----TKIYSAMGSSDYLKAAYNAFDFDKDGLVTYGELRHVFIN-LGEKISDEEFNE 127
            ..||::||     .:....:|..: |:.|:..||.:.||.::.||||..... ||:::...:..:
Zfish   292 FEDFVELMGPKLLAETADMIGIKE-LRNAFKEFDTNGDGEISTGELREAMRKLLGQQVGHRDLED 355

  Fly   128 VFRQADVDGDGVINFRDF 145
            :.|..|::|||.::|.:|
Zfish   356 ILRDIDLNGDGRVDFEEF 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13898NP_612058.1 PTZ00184 8..146 CDD:185504 43/144 (30%)
EFh 18..77 CDD:298682 22/63 (35%)
EFh 88..148 CDD:238008 19/59 (32%)
cabp1aNP_001315294.1 PTZ00184 230..377 CDD:185504 43/145 (30%)
EFh 238..341 CDD:238008 33/103 (32%)
EFh 315..378 CDD:238008 19/60 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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