DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13898 and myl3

DIOPT Version :9

Sequence 1:NP_612058.1 Gene:CG13898 / 38092 FlyBaseID:FBgn0035161 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_989012.1 Gene:myl3 / 394608 XenbaseID:XB-GENE-946570 Length:188 Species:Xenopus tropicalis


Alignment Length:149 Identity:46/149 - (30%)
Similarity:72/149 - (48%) Gaps:23/149 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDLQDICEAFELCD--PEKTGRIRADDLGEVMRTLGQNHTESEIYRY-----SEGLEGDVNGYIQ 68
            |.:::..|||.|.|  |:...:|.....|:|:|.||||.|.:|:.:.     :|.|.      ::
 Frog    42 DQIEEFKEAFSLFDRTPKCEQKITYGQCGDVLRALGQNPTNAEVLKVLGKPKAEELS------LK 100

  Fly    69 LTDFIDLMTKIYSAMGSSDYLKAAYNAF-----DFDKD--GLVTYGELRHVFINLGEKISDEEFN 126
            |.||...:..:.....|.:  |..|..|     .|||:  |.|...|:|||...|||::::||.:
 Frog   101 LMDFDTFLPMLQHISKSKE--KGTYEDFVEGLRVFDKEGNGTVMGAEIRHVLATLGERMTEEEVD 163

  Fly   127 EVFRQADVDGDGVINFRDF 145
            .:. |...|.:|.||:..|
 Frog   164 RLL-QGQEDPNGHINYEAF 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13898NP_612058.1 PTZ00184 8..146 CDD:185504 46/149 (31%)
EFh 18..77 CDD:298682 21/65 (32%)
EFh 88..148 CDD:238008 23/65 (35%)
myl3NP_989012.1 PTZ00184 37..188 CDD:185504 46/149 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1470794at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.