DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13898 and mlc-6

DIOPT Version :9

Sequence 1:NP_612058.1 Gene:CG13898 / 38092 FlyBaseID:FBgn0035161 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_510375.2 Gene:mlc-6 / 186979 WormBaseID:WBGene00010554 Length:143 Species:Caenorhabditis elegans


Alignment Length:143 Identity:41/143 - (28%)
Similarity:76/143 - (53%) Gaps:14/143 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ANDDLQDICEAFELCDPEKTGRIRADDLGEVMRTLGQNHTESEIYRYSEGLEGDVNGYIQLTDFI 73
            |.|::::..|.|.|.|.:..|:|.|..:.||:|:|.:|...|::::..  .:.|....|...:|:
 Worm     3 AIDNMEECREVFMLFDKKGDGKIDAAQVFEVLRSLDENPKNSDVHQCL--AKFDKTARISFENFL 65

  Fly    74 DLMTKI------YSAMGSSDYLKAAYNAFDFDKDGLVTYGELRHVFINLGEKISDEEFNEVFRQA 132
            .:::.:      ||   ..|::| ..:.||.:.:|.:|..|||.|...:|:|:|||||:::.  |
 Worm    66 PVLSHVRNNKIPYS---MEDFIK-GLSHFDKEGEGFITSAELRQVLTTMGDKLSDEEFDKLV--A 124

  Fly   133 DVDGDGVINFRDF 145
            ..:.:|.|....|
 Worm   125 GQEDNGKIKIETF 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13898NP_612058.1 PTZ00184 8..146 CDD:185504 41/143 (29%)
EFh 18..77 CDD:298682 16/58 (28%)
EFh 88..148 CDD:238008 20/58 (34%)
mlc-6NP_510375.2 PTZ00184 5..143 CDD:185504 40/141 (28%)
EFh 9..65 CDD:238008 15/57 (26%)
EFh 82..142 CDD:298682 21/59 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1470794at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.