DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vti1a and SGR4

DIOPT Version :9

Sequence 1:NP_612053.1 Gene:Vti1a / 38085 FlyBaseID:FBgn0260862 Length:230 Species:Drosophila melanogaster
Sequence 2:NP_198767.1 Gene:SGR4 / 833947 AraportID:AT5G39510 Length:221 Species:Arabidopsis thaliana


Alignment Length:215 Identity:63/215 - (29%)
Similarity:112/215 - (52%) Gaps:2/215 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQELLEQMGLEVRELNPGLR 67
            :.:.||:||..|.|.::.........:...::..| |:|.|.|..|:.|:.:|.||.|.|.|.|:
plant     4 VFDGYERQYCELSASLSKKCSSAISLDGEQKKQKL-SEIKSGLENAEVLIRKMDLEARTLPPNLK 67

  Fly    68 SSFNGKLQVAQAELKRLQAEYRLTKDKQRSQANTFTTLDLGDSYEDVSISTDQRQRLLDNSERIE 132
            ||...||:..:::|...:.|.:.....|.:.|.....|:.|.: :..:.|.|||.||:.::||:.
plant    68 SSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMA-DTKTASADQRARLMMSTERLG 131

  Fly   133 RTGNRLTEGYRVALETEQLGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALRE 197
            ||.:|:.:..|..:|||::|..:|.|||.||::|..|...|...:..:|::.:.|..|..|..:.
plant   132 RTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKN 196

  Fly   198 KVVLYGVGVCFVVAVGVSLY 217
            |..:..:.:..:.|:.:.||
plant   197 KWTIGAIIIALIAAIFIILY 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vti1aNP_612053.1 V-SNARE 11..89 CDD:282816 23/77 (30%)
SNARE_Vti1a 128..189 CDD:277244 21/60 (35%)
SGR4NP_198767.1 V-SNARE 12..90 CDD:368237 23/78 (29%)
SNARE_Vti1 127..187 CDD:277215 20/59 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 50 1.000 Domainoid score I4359
eggNOG 1 0.900 - - E1_KOG1666
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H39963
Inparanoid 1 1.050 102 1.000 Inparanoid score I2155
OMA 1 1.010 - - QHG54893
OrthoDB 1 1.010 - - D1195966at2759
OrthoFinder 1 1.000 - - FOG0003233
OrthoInspector 1 1.000 - - otm2538
orthoMCL 1 0.900 - - OOG6_101479
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.740

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