DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX6 and rasd4

DIOPT Version :9

Sequence 1:NP_001261219.1 Gene:RabX6 / 38084 FlyBaseID:FBgn0035155 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001007782.1 Gene:rasd4 / 553052 ZFINID:ZDB-GENE-050506-133 Length:208 Species:Danio rerio


Alignment Length:168 Identity:40/168 - (23%)
Similarity:82/168 - (48%) Gaps:12/168 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIKLQLWDTGGMERVAS 74
            :::..|..||||::|.:||..::|  :...:.|:...| .:||.|...::.:.:.||.|.....:
Zfish    12 RLVFMGAAGVGKTALIKRFLQDSF--EPKHRRTVEELH-SKEYEVAGVKVTINIMDTSGSYSFPA 73

  Fly    75 VTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAEN--AKIFICGNKSDLDGR--EPEVSD 135
            :.....:..:...||:::|:..|...:::...:|:...|:  ..|.:.|||.|   |  |..||.
Zfish    74 MRKLSIQNGDAFALVYSVDDPESLEVVNRLREEILEVKEDKFTPIVVVGNKKD---RLIERRVSA 135

  Fly   136 EEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQ 173
            ::|.|..|...:  :...:.|.:....|.|:|:::.:|
Zfish   136 DDVLAKVEMDWN--NCFMEASAKENENVMEVFKELLQQ 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX6NP_001261219.1 RAB 10..176 CDD:197555 40/168 (24%)
Rab 10..172 CDD:206640 39/165 (24%)
rasd4NP_001007782.1 small_GTPase 9..173 CDD:197466 40/168 (24%)
Ras_dva 12..208 CDD:206714 40/168 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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