DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX6 and rab35b

DIOPT Version :10

Sequence 1:NP_001261219.1 Gene:RabX6 / 38084 FlyBaseID:FBgn0035155 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001003548.1 Gene:rab35b / 445154 ZFINID:ZDB-GENE-040801-62 Length:201 Species:Danio rerio


Alignment Length:186 Identity:62/186 - (33%)
Similarity:104/186 - (55%) Gaps:14/186 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KVILCGDYGVGKSSLFRRFATNTF----ITDTDRKSTLGLDHIDREYSVNEKQIKLQLWDTGGME 70
            |:::.||.|||||||..|||.|||    ||      |:|:|...|...:|.:::|||:|||.|.|
Zfish    10 KLLIIGDSGVGKSSLLLRFADNTFSGSYIT------TIGVDFKIRTVELNGEKVKLQIWDTAGQE 68

  Fly    71 RVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSD 135
            |..::||:||:...|.::|:.:.:|.||.::.:.|.:|....::....:.|||:| |.....|..
Zfish    69 RFRTITSTYYRGTHGVVVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKND-DPNSKVVET 132

  Fly   136 EEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKS 191
            .:.:.|.||   :..:.::||.:....|||||..|:..::.|.:..:..|..:.::
Zfish   133 NDAQKFAEQ---MGISLFETSAKENVNVEEMFNCITELVLRAKKESVAKQQQQQQN 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX6NP_001261219.1 Rab 10..172 CDD:206640 60/165 (36%)
rab35bNP_001003548.1 P-loop containing Nucleoside Triphosphate Hydrolases 3..201 CDD:476819 62/186 (33%)

Return to query results.
Submit another query.