DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX6 and rab-6.2

DIOPT Version :10

Sequence 1:NP_001261219.1 Gene:RabX6 / 38084 FlyBaseID:FBgn0035155 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_510790.1 Gene:rab-6.2 / 181759 WormBaseID:WBGene00004270 Length:205 Species:Caenorhabditis elegans


Alignment Length:170 Identity:53/170 - (31%)
Similarity:100/170 - (58%) Gaps:7/170 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIKLQLWDTGGME 70
            :.|.|::..|:..|||:||..||..::|  |...::|:|:|.:.:...:.::.::||||||.|.|
 Worm     8 LKKFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 70

  Fly    71 RVASVTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVT-YAENAKIFICGNKSDLDGREPEVS 134
            |..|:..||.:.:..|::|:.:.|:.|||..|:.:.|:.| ...:..|.:.|||:||..:. :|:
 Worm    71 RFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVT 134

  Fly   135 DEEVEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQL 174
            .:|.|...::.:.:.   .:||.::|..|:::||.|:..|
 Worm   135 TDEGERKAKELNVMF---IETSAKAGYNVKQLFRRIAGAL 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX6NP_001261219.1 Rab 10..172 CDD:206640 51/162 (31%)
rab-6.2NP_510790.1 Rab6 11..171 CDD:206654 51/165 (31%)

Return to query results.
Submit another query.