DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX6 and rsef-1

DIOPT Version :10

Sequence 1:NP_001261219.1 Gene:RabX6 / 38084 FlyBaseID:FBgn0035155 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001359915.1 Gene:rsef-1 / 180593 WormBaseID:WBGene00016344 Length:634 Species:Caenorhabditis elegans


Alignment Length:206 Identity:61/206 - (29%)
Similarity:94/206 - (45%) Gaps:21/206 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDREYSVNEKQIKLQLWDTGGMERVAS 74
            ::::|||..|||||...|.....|....  .||||:|...:..:|:.:.:.||||||.|.||..|
 Worm   441 RIVMCGDAAVGKSSFVMRVIRRQFTNQL--PSTLGVDFHVKTVNVDGRNVALQLWDTAGQERFRS 503

  Fly    75 VTSSYYKFAEGAILVFALDNAASFHSLSQHLLDIVTYAENA-KIFICGNKSDLDGREP-EVSDEE 137
            :..||::.|:|||||:.:....||..:...:..|....|.: .|.:.|||.|:....| .|:..:
 Worm   504 LCKSYFRRADGAILVYDVCAEQSFLRVRDWIETIKESTERSIPIILVGNKVDMRISTPGSVAKTD 568

  Fly   138 VEAFCEQCHSLISATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSGAA 202
            ..:.......|.   .:||...|:.::.....::|          ||.|:|    .|:..|:|..
 Worm   569 GASMAAAMGVLF---METSALDGSNIDNAMLALTR----------ELMAVE----DVEIRSTGVV 616

  Fly   203 TNEEDASSCGC 213
            .|...|...||
 Worm   617 LNPAVAKKGGC 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX6NP_001261219.1 Rab 10..172 CDD:206640 49/163 (30%)
rsef-1NP_001359915.1 EF-hand_7 3..63 CDD:463900
SMC_N <155..>362 CDD:481474
Rab 440..600 CDD:206640 49/163 (30%)
Blue background indicates that the domain is not in the aligned region.

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