DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and REV1

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001119373.1 Gene:REV1 / 834504 AraportID:AT5G44750 Length:1105 Species:Arabidopsis thaliana


Alignment Length:1007 Identity:294/1007 - (29%)
Similarity:464/1007 - (46%) Gaps:205/1007 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FSEWGGYFEAKKSKLEEQF----AAASDPFRKSD--LFQGISIFVNGRTDPSADELKRIMMVHGG 67
            ||::|.|.|.|..||:.||    :|||.....|:  :|||:||||:|.|.||..|||..||.:||
plant    51 FSDFGSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFTIPSHQELKGYMMKYGG 115

  Fly    68 TFHHY-ERSHTTYIIASVLPDVKVRNMNLSK----FISAKWVVDCLEKKKIVDYKPYLLYTNQKT 127
            .|.:| .|...|:||.|.|||.||:|:....    .:...|:||.:...:::.:.||.|.....|
plant   116 RFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISANRLLGWVPYQLDQLNDT 180

  Fly   128 SQPMLIFGKPK----------------DNGANESK-------SDVEPPKDKAEVEVD------ST 163
            ...:..|..|:                |.|.:|::       .|.|..:|..:.|:|      :|
plant   181 QPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRADDSEEARDHIDDEIDGVYIENTT 245

  Fly   164 KDETQMELGGILKNLQQAVA-----TSPEKEASASESKITNLSTTSNN----------------- 206
            .:.|:....|.||:.:....     ...|||.|:.....|||.:||:|                 
plant   246 PELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQSTTNLHSTSDNKSVHANGKNGGKSIATA 310

  Fly   207 --STTAR--TAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRLRQK-HGTQGFPKRETLKSLANS 266
              |:|.|  |..||||:..::||||||.|.|       :..|.|:: ||:....|      .|:|
plant   311 AGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-------WRNRYRKRFHGSSNGLK------WADS 362

  Fly   267 HHNCLE----RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELE 327
            ..|..|    ..::|||:|||||||.::.|.||...|:||.||                      
plant   363 GQNTAEMAKKSTIIHIDLDCFFVSVVIKNRLELHDKPVAVCHS---------------------- 405

  Fly   328 LFAQRFEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY 392
                                   |.....:||:|.:|.||..|::.||||..|..|||:|..:||
plant   406 -----------------------DNPKGTAEISSANYPARAYGVKAGMFVRHAKDLCPQLVIVPY 447

  Fly   393 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPC 457
            :||.|:|||...||.:.::...::|:||||.|::::||: ::..:|:|  |.:|.|:...|||..
plant   448 NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLS-DVETEVLA--STIRNEILETTGCSA 509

  Fly   458 SAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGD 522
            |||:.|..|:||:||:.|||.||..: |:..:..::..:.:..||||||.:..||.:..:..||.
plant   510 SAGIGGTMLMARLATRVAKPAGQLYI-SAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNIQTCGQ 573

  Fly   523 VQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNS----VECEQF 583
            ::..:.:.::|..|.|.|:.|:...||:|.|.:...|..|::.||:|:|:||.:.    :..:.|
plant   574 LRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVFILVQHF 638

  Fly   584 LCQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVI 648
            |..|.:||:.||.......|:..|||..|..:|. |.:||||.|.||.:::|..:..||||:.|:
plant   639 LQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDAE-EPTKYMGCGDCDNLSRSITVPAATDDIEVL 702

  Fly   649 TTVVLDLMKDADIPPDELRGLGIHLTRLEDANEVRKENNIKEMFGKMSEMRKDKPIPQGAVGDKS 713
            ..:...|.....:...|:||:|:.:::|:.|:...|.:...:.:  :|.......|.|       
plant   703 QRISKKLFGSFCLDVKEVRGVGLQVSKLDSADPSNKGSRTLKSW--LSSAPAVVQIEQ------- 758

  Fly   714 IGDDKVNKPLVFENKPKPREPRNVLSMLTAAAVSRKSVTEDRS-QRGTSKPITRPLSLVPKLDED 777
              ||.|....|.||....|.....:|.|      |:|.:|:.| |.|.:.....|:..   ||.:
plant   759 --DDNVFAAKVRENSDCNRPVTGGVSRL------RESNSEESSIQSGDTNSSLPPMCY---LDME 812

  Fly   778 VLAQLPEDIRLEVIANREEHLCIAEYDG-YRSPQYPTL---RSPPLLN---PYVT-----TNVSP 830
            ||..||.::             ::|.|| |....:..:   |....:|   |:|:     .::..
plant   813 VLENLPPEL-------------LSELDGTYGGKLFELIEKKRGKRRINCNSPHVSLDGTAASIKE 864

  Fly   831 LKATDLKPSTSRAAVARLQKRKERKEQEHYI-------RSDQIVADYIDDLPDFVNPHILKLISH 888
            ||:..:|       :..|....|::.:|.|:       .|:|...:..|.||..::...:.::. 
plant   865 LKSLSVK-------IHGLSTSGEKEYKEPYVPHPSIARTSNQHTIEMTDLLPSSLSQVDVSVLQ- 921

  Fly   889 PVEMPELLMGDNYKDLLNDWVSREEVPKPNDV 920
              |:||.|..    |:|..:.|.......:||
plant   922 --ELPEELRA----DVLGAFPSHRRQQSSSDV 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351 36/86 (42%)
PolY_Rev1 218..676 CDD:176455 153/466 (33%)
Rev1_C 890..985 CDD:213388 9/31 (29%)
REV1NP_001119373.1 BRCT 87..161 CDD:214602 34/73 (47%)
PolY_Rev1 326..730 CDD:176455 153/466 (33%)
DinP 375..734 CDD:223466 136/408 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 121 1.000 Domainoid score I1876
eggNOG 1 0.900 - - E1_COG0389
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 337 1.000 Inparanoid score I659
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D299766at2759
OrthoFinder 1 1.000 - - FOG0004982
OrthoInspector 1 1.000 - - oto3329
orthoMCL 1 0.900 - - OOG6_103155
Panther 1 1.100 - - LDO PTHR45990
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3516
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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