DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rev1 and polh

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001035337.2 Gene:polh / 678520 ZFINID:ZDB-GENE-060421-4949 Length:749 Species:Danio rerio


Alignment Length:749 Identity:153/749 - (20%)
Similarity:254/749 - (33%) Gaps:268/749 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 ERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHS---KGGNAATDVPVHPQADRKAELELFAQRF 333
            ||.|..:|||||:|.|..|.:|||:..|..|...   |||.                        
Zfish     6 ERVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGG------------------------ 46

  Fly   334 EHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKT--IP----- 391
                                     |.:.|||||..|:...||...|.||||:|:.  :|     
Zfish    47 -------------------------IIAVSYEARAHGVGRNMFADDARKLCPDLQVARVPEAHGK 86

  Fly   392 YDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHE---------------LNVDVMAF 441
            .|...|:|.:..:.:.::::.: ||..|.||.:::||....|               .|..:..|
Zfish    87 ADLTHYREASVEVIEVMSRFAV-IERASIDEAYMDLTASVQERLKNTSVQDITAQQLKNTHIQGF 150

  Fly   442 ---------------------------------------------VSHLRQEVYSKTGCPCSAGV 461
                                                         |..:|..|...||..||||:
Zfish   151 PTQQENTHLDRDAQRAAGLQQWLDLLSSSTESSPADLRLAVGALIVEQMRAAVEEHTGFRCSAGI 215

  Fly   462 AGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLP---------GVGSSISHKLKQAGL 517
            :.||:||::|....|||.|.:|..|:      .|.....||         .:||||:..|   .:
Zfish   216 SHNKVLAKLACGLNKPNRQTVLPLSS------VPQLFSTLPISKIRNLGGKLGSSITETL---SV 271

  Fly   518 NNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFG----IRFTNSV 578
            .|.||:...:..::|:..|.|.|..|:..||||:..|:...|:.|::....||.    :|....|
Zfish   272 ENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQV 336

  Fly   579 ECEQFLCQLSEEVTKRLVEIR----RKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIK 639
              :.:|.||:.|:.:||.:.|    |.||.:.:.:.....:.....|:      |..:.:...:|
Zfish   337 --QYWLHQLALELEERLNKDRDVNGRVARQLTVGVRQAGGQRSGSFSR------CCALVRYDAMK 393

  Fly   640 YATDDVNVI-----------------TTVVLDLMKDADIPPDELRGLGIHLT------------- 674
            ...|.:.:|                 |.:.|...|.:|.|.....|:...|:             
Zfish   394 MTNDSLTIIKSLNTAGAHQEAWSPALTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQSSSS 458

  Fly   675 -------------RLEDANEVRKENNIKEMFGKMSEMRKDK------PIPQ--GAVGDKSIGDDK 718
                         |.:|..:.....:|...|.:.| :.|.:      |..|  .|.|:.:.||..
Zfish   459 QRSPMERPAQKRKRQQDQRQRENTTSISAFFQRKS-LEKQEIQNSLCPGDQSTSASGEHACGDTA 522

  Fly   719 VNKPLVFENKPKPREPRNVLSMLTAAAVSRKSV------TEDRSQRGTSKPITRPLSLVPKLDED 777
            ..|...            :.:.|...::.::.:      .||:|       :..|       :|:
Zfish   523 AQKTTA------------ISTFLQRESLEKQEIQNVSLDDEDQS-------VCAP-------EEN 561

  Fly   778 VLAQLPEDIRLEV-IANREEH-----LCIAEYDGYRSPQYPTLRSPPLLNPYVTTNVSPLKATDL 836
            ...:.|..|...: :.:.|:|     ||:.: ...|:|.    .:||                  
Zfish   562 TCREKPAGISTSLQMKSLEKHQIQNSLCVGD-QSVRAPG----ENPP------------------ 603

  Fly   837 KPSTSRAAVARLQKRKERKE-QEHYIRSDQIVAD 869
            :..||..:.|.:....:.|. ::|.|::.....|
Zfish   604 REQTSDESPAGISSFFQMKSLEKHRIQNSPCTGD 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 117/533 (22%)
Rev1_C 890..985 CDD:213388
polhNP_001035337.2 PolY_Pol_eta 10..428 CDD:176456 109/484 (23%)
zf_UBZ 682..712 CDD:465769
Blue background indicates that the domain is not in the aligned region.

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