DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rev1 and poli

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001027479.2 Gene:poli / 613070 XenbaseID:XB-GENE-943046 Length:742 Species:Xenopus tropicalis


Alignment Length:695 Identity:157/695 - (22%)
Similarity:254/695 - (36%) Gaps:240/695 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 KSLANSHHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAE 325
            ||:..|..:. .|.::|||||||:..|.:...||||..|:.:                       
 Frog    39 KSVGRSGTSA-SRVIVHIDMDCFYAQVEMIRNPELRNKPLGI----------------------- 79

  Fly   326 LELFAQRFEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTI 390
                .|::                        .:.:|:||||:.|:...|.:..|.:.||:|..:
 Frog    80 ----QQKY------------------------IVVTCNYEARKFGVTKLMLIKDAREKCPQLVLV 116

  Fly   391 P-YDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLA----------------------- 431
            . .|...|:|:::...:.:.:::..:|.:..||.::::|:|.                       
 Frog   117 SGEDLTPYREMSYRATELLEEFSPQVERLGFDENYIDVTELVDKKLQEERGNGRNPGVCGHVYSD 181

  Fly   432 HELNVDVMAFV-----SHLRQEV----YSKTGCPCSAGVAGNKLLARMATKEAKPNGQ-FLLDSS 486
            .::||:..|.|     ||:..|:    |::.|....||.|.|||||::.:...|||.| .||..|
 Frog   182 QKMNVNDWAHVRIAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHES 246

  Fly   487 NDILAYMAPMSLD---LLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCR 548
            :..|.    .|||   .:||:|...|.:|:..||:...|:|...:..:||..|..:...:....|
 Frog   247 HSHLI----NSLDHVKRIPGIGYKTSKRLESLGLSRISDLQACPITLLEKEFGSSVAHRIQMLSR 307

  Fly   549 GIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKRLVEIRRKARSINLKIMVRA 613
            |.||..:......:::|.|.:|       .:|.    .:||      |:|:.:.|..||  :|| 
 Frog   308 GEDDSAVVPSGPPQSISDEDSF-------KKCS----TVSE------VKIKMEERLRNL--LVR- 352

  Fly   614 AEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLED 678
                                                     :.||..||         |..||  
 Frog   353 -----------------------------------------ISKDGRIP---------HTLRL-- 365

  Fly   679 ANEVRKENNIKEMFGKMSEMRKDKPIPQGAVGDKSIG---------------------DDKVNKP 722
              .:|:.:...:.|.:.|   :..|||  |...::||                     |.|:...
 Frog   366 --TIRQFSPSNKWFNRES---RQCPIP--AHISQNIGAECQAVPALMELLMRLFEKMIDVKMQFH 423

  Fly   723 LV-----FENKPKPREPRNVLSM-LT-----AAAVSRKSVTEDRS--------QRGTSKPITRPL 768
            |.     |.|.......|:.:.. ||     |||...|..||...        :..:|.|.|.|.
 Frog   424 LTLLNVCFSNLKASNSTRSSIGFYLTLKAPPAAATPLKGSTEAEQHTAESFPLKENSSAPHTAPQ 488

  Fly   769 SL------VPK------------LDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYRSPQYPTLR 815
            |:      ||.            :|.:|.:||||:|:.|:||. :.|...:.....||.. .:..
 Frog   489 SVGQPTAPVPTNHHTMLETLPEGIDPEVFSQLPEEIQQEIIAG-QRHAAASSSSSVRSAS-KSQA 551

  Fly   816 SPP--LLNPYVTTNVSPLKATDLKPSTSRAAVARLQKRKERKEQE 858
            :||  :||.:     |..||.|| ||.....:.:...:..|...|
 Frog   552 APPKGILNFF-----SRAKAADL-PSQCDGVLLKEHSQTNRGSTE 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 99/451 (22%)
Rev1_C 890..985 CDD:213388
poliNP_001027479.2 PolY 53..433 CDD:452909 110/513 (21%)
UBM 509..533 CDD:464159 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

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