DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and rev1

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001116772.1 Gene:rev1 / 570043 ZFINID:ZDB-GENE-081105-180 Length:1268 Species:Danio rerio


Alignment Length:1289 Identity:375/1289 - (29%)
Similarity:570/1289 - (44%) Gaps:352/1289 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTRD-------EDNGFSEWGGYFEAKKSKLEEQFAAASDPFRKSD-----LFQGISIFVNGRTDP 53
            |:||       |::|:...|||..||.|||||||...:...:|.|     :|.|::|:|||.|||
Zfish     1 MSRDGWRKKASENDGWGGQGGYMAAKVSKLEEQFQKDAPREQKKDGKSSCIFSGVAIYVNGYTDP 65

  Fly    54 SADELKRIMMVHGGTFH-HYERSHTTYIIASVLPDVKVRNMNLSKFISAKWVVDCLEKKKIVDYK 117
            ||.||:|:||:|||.|| :|.||.||:|||:.||:.|::.:...|.:..:|::|.::..:.:.|.
Zfish    66 SAAELRRLMMLHGGQFHLYYSRSKTTHIIATNLPNFKIQELKGEKVVRPEWIIDSIKAGRQLSYI 130

  Fly   118 PYLLYTNQKTSQPMLIFG--------------KP-------KD---------------------- 139
            .|.||..||......:.|              ||       ||                      
Zfish   131 QYQLYAKQKGLNFTRVSGIEGQDPSSNHGPDIKPQPSHTLSKDVLKSTQANHMANYTEKTDHQLD 195

  Fly   140 ----NGANESKSDVEPPKDKAE-VEVDSTKDETQMEL------------------GGILK----- 176
                ||.:...|:|:..|.:.. :..|...|:....:                  .|.||     
Zfish   196 IRLRNGLHSIISEVDAEKSRVNGIHDDDDDDDIACSILPRGSQDTLLTNGHVHPVNGALKPQDFA 260

  Fly   177 --------------------------------------NLQQAV-ATSPEKE------------- 189
                                                  :|:..: |.||.|:             
Zfish   261 DHHPHVVDKASNQSHLPQDKYREGEEPCCSYTESKANSHLRSLISAASPAKQPGPHNMQTDLHQK 325

  Fly   190 -------------ASASESKITNLS----TTSNNSTTA-------RTAADPNFLSEFYKNSRLHH 230
                         ||..:.....|:    .|||:||.|       :::|:...:|||:.:|||||
Zfish   326 PTSNSGTLGAPQKASLHDQTTVRLNGSYHVTSNSSTLANSSNQSGKSSAEAGIISEFFSHSRLHH 390

  Fly   231 IATLGAGFKQYVCRLRQKHGTQG---FPKRETLKSL-AN----SH-------------HNCLERY 274
            |:|....|.:||..|:.:....|   |..||.||.| ||    ||             .:|    
Zfish   391 ISTWRNEFSEYVNSLQSRRRAAGGAVFSGREKLKKLKANCNSVSHFDPGSLMAAPQVRQSC---- 451

  Fly   275 VMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKG-GNAATDVPVHPQADRKAELELFAQRFEHHFH 338
            |:|:||||||||||:|.||:|.|.|:|||.::| |..|.    .|.|:.:.|.:.:..:.:|:..
Zfish   452 VLHVDMDCFFVSVGIRHRPDLIGKPVAVTSNRGPGRVAQ----RPGANPQLEFQYYQNKQKHYRK 512

  Fly   339 ---DGD--------KAEKVRSGFDK---KMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKT 389
               |||        ..|...:|..:   .:|::||||||||||:.|:|||||.|:|.:|||:|::
Zfish   513 EKTDGDLEMTPSPQDGEVPSNGVHEDLAALSMAEIASCSYEARQAGVRNGMFFGRAKQLCPDLQS 577

  Fly   390 IPYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTG 454
            :||||..|||||..:|:.:|.||.||||:||||..|:.|.|..||.|........:|:::..|||
Zfish   578 VPYDFHAYKEVALAMYEILASYTHNIEALSCDEALVDATALLVELGVSPDELARSIREDIKEKTG 642

  Fly   455 CPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNN 519
            |..|.|::.|.|||||||::|||.||:|| .|.::..::....:..|||||.|:|.||...|::.
Zfish   643 CCASVGMSSNILLARMATRKAKPKGQYLL-RSEEVDDFIRDQPVSSLPGVGRSMSSKLTSLGVST 706

  Fly   520 CGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFL 584
            |||:|..:|.::::..|.:.||.||:.|||:||||:..|:.||:||||||:.||||...|.|.||
Zfish   707 CGDLQQLSLSQLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSVSAEMNYNIRFTQVEEAESFL 771

  Fly   585 CQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVIT 649
            ..||.||.|||.....:.|.:.||:|:|...||||.:||.|||:||...:|.|:...||...||.
Zfish   772 NNLSMEVQKRLEGAGLRGRRVTLKVMMRKPGAPVEPAKYGGHGICDNFARSVLLAQPTDSGRVIA 836

  Fly   650 TVVLDLMKDADIPPDELRGLGIHLTRLEDANE------VRKENNIKE-MFGKMS--EMRKDKPIP 705
            :..:.|.....:...::||:|:.:.:|:.::.      ..:..:|:: :..|.|  ...|:.|..
Zfish   837 SEAIKLFHAMKLNVKDMRGVGLQVQQLDGSHADPSGQGPSRGRSIRDLLLAKQSAHSPSKESPSQ 901

  Fly   706 QGAVGDK-----SIGDDKVNKPL-----------------VFENKP--------KPREPRNVL-- 738
            .|.:...     |....:|...|                 :.:..|        .|..|.:|.  
Zfish   902 DGLISASSSRAFSSNQKRVTPALSPPPSTSSSSSPPPSFTIIDPMPGTSKGDYHHPHTPNHVRAC 966

  Fly   739 ---------------SMLTAAAVSRKSVTEDRSQRGTSKPIT--------RPLSLVP-------- 772
                           |:|.|..:..:...|:..:....:|.|        ||.|..|        
Zfish   967 LNISIEVPSPSQVDPSVLKALPIDIRRQVEETWRYREEQPSTSSHYSTPPRPPSTPPPGPSLVLQ 1031

  Fly   773 ---------------------KLDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYRSP------- 809
                                 ::|.||.|.||.::        :|.||.|    ||:.       
Zfish  1032 LPNQPGQPCTTGIILELPDFSQVDPDVFAALPREL--------QEELCSA----YRNKGNAQAQA 1084

  Fly   810 --------QYPTLRSP---PLLNPYVTTNVSPLK--ATDLK---PSTSRAAVARLQKRKERKEQE 858
                    .:|.|:.|   .|...|...|.||.|  ::.||   |..|.|      |....|...
Zfish  1085 STVVEQKNSFPQLKQPAVGKLKRRYKKRNTSPAKNGSSPLKKMFPGNSPA------KTSPSKTLP 1143

  Fly   859 HYIRSDQIVADYIDDLPDFVNPHILKLISHPVEMP-ELLMG----DNYKDLLNDWVSREEVPKPN 918
            ..:|...:      ..|..::..:.:.:..|:..| ..|.|    ...:.||.:||:....|...
Zfish  1144 LPLREQDL------KCPSSLSTDVPETLPKPIPRPAPTLAGAHEFSEIRTLLREWVTTISEPMEE 1202

  Fly   919 DVDLILKQVSRMIKNDQLDHVCDVMKYWCRIINMKRSSSCCWHVAYKHIEESIQ 972
            |:..::|..:.::::..|:.:..|:||..|:  |::||...|.:|:..:.:::|
Zfish  1203 DILQVVKYCTELVEDKDLEKLYLVIKYMKRL--MQQSSESVWSMAFDFVLDNVQ 1254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351 37/82 (45%)
PolY_Rev1 218..676 CDD:176455 209/493 (42%)
Rev1_C 890..985 CDD:213388 21/88 (24%)
rev1NP_001116772.1 BRCT 51..121 CDD:214602 35/69 (51%)
PolY_Rev1 379..863 CDD:176455 209/492 (42%)
DinP 451..843 CDD:223466 180/400 (45%)
DUF4414 979..>1086 CDD:291075 22/118 (19%)
REV1_C 1148..1267 CDD:293332 23/115 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576233
Domainoid 1 1.000 176 1.000 Domainoid score I3577
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32309
Inparanoid 1 1.050 537 1.000 Inparanoid score I1162
OMA 1 1.010 - - QHG53314
OrthoDB 1 1.010 - - D299766at2759
OrthoFinder 1 1.000 - - FOG0004982
OrthoInspector 1 1.000 - - oto39666
orthoMCL 1 0.900 - - OOG6_103155
Panther 1 1.100 - - LDO PTHR45990
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1082
SonicParanoid 1 1.000 - - X3516
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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