DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and Rev1

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:XP_006496219.1 Gene:Rev1 / 56210 MGIID:1929074 Length:1264 Species:Mus musculus


Alignment Length:1265 Identity:377/1265 - (29%)
Similarity:575/1265 - (45%) Gaps:333/1265 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RDEDNGFSEWGGYFEAKKSKLEEQF---AAASDPFRKSDLFQGISIFVNGRTDPSADELKRIMMV 64
            |.|::|:.:||||..||..||||||   ||.......|.:|.|::|:|||.|||||:||:.:||:
Mouse    24 RTENDGWEKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTDPSAEELRNLMML 88

  Fly    65 HGGTFH-HYERSHTTYIIASVLPDVKVRNMNLSKFISAKWVVDCLEKKKIVDYKPYLLYTNQKTS 128
            |||.:| :|.||.||:|||:.||:.|::.:...|.|..:|:|:.::..:::...||.|||....:
Mouse    89 HGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSSAPYQLYTKPSAA 153

  Fly   129 QPMLIFG---KPKDNGAN-------------------ESKSDVEP-------------------- 151
            |..|.|.   ||:|.|..                   |::|:|:.                    
Mouse   154 QKSLNFNPVCKPEDPGPGPSNRAKQLNNRVNHIIKKIETESEVKANGLSSWNEDGVNDDFSFEDL 218

  Fly   152 --------------PKDKA-----------------------------EVEVDSTKDETQMELGG 173
                          |:|.|                             .:.:|||::|.:.|...
Mouse   219 EHTFPGRKQNGVMHPRDTAVIFNGHTHSSNGALKTQDCLVPVGNSVASRLSLDSTQEEKRAEKSN 283

  Fly   174 ------ILKNLQQAVAT-----SPEKEASASESKITNL-------STTSNNSTTARTA------- 213
                  .:::||.:..:     ||.:..|.|.|..:|.       ||....|:|..|:       
Mouse   284 ADFRDCTVQHLQHSTRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKV 348

  Fly   214 --------ADPNFLSEFYKNSRLHHIATLGAGFKQYVCRL-RQKHGTQGFPKRETLKSLANS--- 266
                    :|.||:|:||..||||||:|......::|..| ||..|.  ||.||.||.:...   
Mouse   349 APSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQRQSSGI--FPGREKLKKVKTGRSS 411

  Fly   267 ----------------HHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVP 315
                            |.:|    |||:||||||||||:|.||:|:|.|:|||.::|...|   |
Mouse   412 LVVTDTGTMSVLSSPRHQSC----VMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGTA---P 469

  Fly   316 VHPQADRKAELELFAQRF----------EHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKG 370
            :.|.|:.:.|.:.:..|.          ...:.:.|..:  .:|.|..:|.:||||||||||:.|
Mouse   470 LRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQDSTQ--TNGIDSVLSKAEIASCSYEARQVG 532

  Fly   371 IRNGMFVGQALKLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELN 435
            |:||||.|.|.:|||.|:.:||||...:|||..:|:|:|.||.:||||||||..:::||:..|..
Mouse   533 IKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAVSCDEALIDVTDILAETK 597

  Fly   436 VDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLL--DSSNDILAYMAPMSL 498
            :....|.:.||.|:..||.|..|.|:..|.||||||||:|||:||:.|  |..:|   ::....:
Mouse   598 LSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDD---FIRGQLV 659

  Fly   499 DLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKT 563
            ..|||||.|:..||...|:..|||:|..|:.|::|..|.|.||.|::.|||:||||:..|:.||:
Mouse   660 TNLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKS 724

  Fly   564 VSAEMNFGIRFTNSVECEQFLCQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGV 628
            ||||:|:|||||...|.|.||..||||:.:||.....|.:.:.||||||...||:||:|:.|||:
Mouse   725 VSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGI 789

  Fly   629 CDIINKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDANEVRKENNIKEMFG 693
            ||.|.::..:..|||...:|....|::.....:...::||:||.:.:|..||     :|:.....
Mouse   790 CDNIARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVNQLVPAN-----SNLSTCSS 849

  Fly   694 K---MSEMRKDKPIPQGAVGDKSIGD----DKVNKPLVFENK-----------PKPREPRNVLSM 740
            :   .|.:...:|        .|:.|    .|..||...|:|           ........:||.
Mouse   850 RPSAQSSLFSGRP--------HSVRDLFQLQKAKKPTEEEHKEVFLAAVDLEVSSTSRACGLLSP 906

  Fly   741 LTAAAVSRKSVTED-------RSQRGTSKPITRPLSL-----VP---KLDEDVLAQLPEDIRLEV 790
            |:|...:  ||:.|       |...|...|::....|     ||   ::|:.||..||.|:|.::
Mouse   907 LSAHLAA--SVSPDTNSGECSRKWNGLHSPVSGQSRLNLSIEVPSPSQIDQSVLEALPLDLREQI 969

  Fly   791 IANREEHLCIAEYDGYRSP----------------------QYPTLRSPPLLNPYVTTNVSPLKA 833
                 |.:|.|:....|..                      |.|..:.|  .|.....:|..|.|
Mouse   970 -----EQVCAAQQGEPRGKKKEPVNGCSSGVLPHPVGTVLLQIPEPQEP--CNSDSKISVIALPA 1027

  Fly   834 -TDLKPSTSRAAVARLQK---------------------------------------RKERKEQE 858
             :.:.|....|..|.|||                                       :.:|.:::
Mouse  1028 FSQVDPDVFAALPAELQKELKAAYDQRQRQGEDTTHQQPTSTSVPKNPLLQLKPPAMKDKRNKRK 1092

  Fly   859 HYIRS-------DQIVADYIDDLPD-FVNPHILK--LISH-------PVE-----------MPEL 895
            :.|.|       :::::.....||. :.:|..|.  .:.|       |:|           :..|
Mouse  1093 NLIGSPRKSPLKNKLLSSPAKTLPGAYGSPQKLMDGFLQHEGMASERPLEEVSASTPGAQDLSSL 1157

  Fly   896 LMG------------------DNYKDLLNDWVSREEVPKPNDVDLILKQVSRMIKNDQLDHVCDV 942
            |.|                  .:.|.||.:|::....|...|:..:::..:.:|:...|:.:..|
Mouse  1158 LPGQSSCFRPAAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLV 1222

  Fly   943 MKYWCRIINMKRSSSCCWHVAYKHIEESIQ 972
            :||..|:  |::|....|::|:..|.:::|
Mouse  1223 IKYMKRL--MQQSVESVWNMAFDFILDNVQ 1250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351 36/82 (44%)
PolY_Rev1 218..676 CDD:176455 206/489 (42%)
Rev1_C 890..985 CDD:213388 22/112 (20%)
Rev1XP_006496219.1 BRCT_Rev1 63..146 CDD:349351 38/83 (46%)
PolY_Rev1 361..837 CDD:176455 192/532 (36%)
DUF4414 948..>969 CDD:373035 5/20 (25%)
Rev1_C 1170..1263 CDD:213388


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833535
Domainoid 1 1.000 176 1.000 Domainoid score I3585
eggNOG 1 0.900 - - E1_COG0389
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32309
Inparanoid 1 1.050 542 1.000 Inparanoid score I1154
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53314
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004982
OrthoInspector 1 1.000 - - oto93188
orthoMCL 1 0.900 - - OOG6_103155
Panther 1 1.100 - - LDO PTHR45990
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1082
SonicParanoid 1 1.000 - - X3516
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.790

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