DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and eco

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_648106.1 Gene:eco / 38812 FlyBaseID:FBgn0035766 Length:1052 Species:Drosophila melanogaster


Alignment Length:895 Identity:158/895 - (17%)
Similarity:282/895 - (31%) Gaps:313/895 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 FGKPKDNGANESKSDVEPPKDKAEVEVDSTKDETQM------ELGGILKNLQQAVATSPEK---- 188
            |...||..|..|....:....|....:...:|...|      :....||...|...|.|:|    
  Fly   166 FSAQKDPDAFSSPESFQTRLSKVAAMLMKGQDSRSMLEKSKKKHNHSLKTTAQVHTTKPKKTSPA 230

  Fly   189 EASASESKITNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRLRQKHGTQG 253
            |.|.|:.:..:.|..|..:|..|.......:|...:|                    |::..|..
  Fly   231 EESQSDDEKPSSSKNSRKNTEVRETRSSQIISPKTRN--------------------RRRPFTSA 275

  Fly   254 FPKRETLKSLANSHHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHP 318
            ....:|||:.|:.|.|                   :|:..|.:...:.:.:|:..:         
  Fly   276 DINCKTLKAAAHLHEN-------------------MRSYDEEKTAAVKLENSRSRS--------- 312

  Fly   319 QADRKAELELFAQRFEHHFHDGDKAEKVRSG--FDKKMSLSEIASCSYEAREKGIRNGMFVGQAL 381
                |:.:|:        |...|.|.|..:|  .:|....||:|:.         :.....|.::
  Fly   313 ----KSPVEV--------FKSNDDAVKRNTGNTNNKTAKSSEVATA---------KRPESPGSSM 356

  Fly   382 KLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLR 446
            |:..|:.....:...:|.......:|......:.:|.|.... .::..:....::..|||.||..
  Fly   357 KIDVEVPESDEEASNHKPQKRQHPETSTPVAPSADADSGSPQ-SKMRKVTLSSSIPTMAFYSHSG 420

  Fly   447 QEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHK 511
            :.|......|   .::.|.|  :..||                   ::|.|..|| |:...:.||
  Fly   421 EAVTKSRRRP---SISKNSL--KQPTK-------------------ISPTSRPLL-GINKGVHHK 460

  Fly   512 L-KQAGLNN---CGDVQN---------------TTLEKMEKV---------------LGKKL--- 539
            : |:.|..|   ..|:.|               |..|:..||               :.|.|   
  Fly   461 IRKRHGFANRLPATDMDNILNSLSNERLKNLITTKREERAKVEEVHQILRNAKDPIKMAKPLSVI 525

  Fly   540 -------GQNL-----------FQNCRGIDD-------RP----LAYEQIRKTVSAE-------- 567
                   ..||           |.:...::|       .|    :.:|.::|:.:||        
  Fly   526 EADDANNNNNLPATAWQETSADFSDLSDVEDIDPIIEVEPIIPIIRHEPVQKSPTAEPADLSKRK 590

  Fly   568 -MNFGIRFTNSVE---CEQFLCQLSEEVTKRLVEIRRKARSINLKI------------------- 609
             ...|.|.:..:|   .:.....:|:...:.:..||||.|.:.:|.                   
  Fly   591 FFKSGRRSSTCMEVRITDNIRASVSQGKIELVQTIRRKPRQVRVKSATIFSAEQATVDAILKNLD 655

  Fly   610 ------------MVRAAEAPVETSKYMGHGVCDIINKS---------------SLIKYATDDVNV 647
                        :|:|.....|.:......:.|||..:               ..:.|.|||.||
  Fly   656 DTVVDEIVEANPVVQATPIDAEETTMETESLPDIIEYAPEANDVEIDPFAEFRQRLPYQTDDPNV 720

  Fly   648 I--TTVVLDLM--------KDADI---PPDELRGLGIHLTRLEDANEVRKENNI-----KEMFGK 694
            :  ..::|:.:        |:.:|   .||:.:         ::||::  .:|:     .|...:
  Fly   721 VEQQQILLEFLISNNICTEKNFEIFIANPDDYK---------DEANQI--VDNLYMVVNSEEAAQ 774

  Fly   695 MSEMRKDKPIPQGAVGDKSIGDDKVNKPLVFENKPK-----------------PREPRNVLSMLT 742
            :::|   :.:...||...    .|.:.|.|.|.:||                 .|.|...:.:||
  Fly   775 LAQM---ETVENTAVAIA----PKQDAPAVEEVQPKLFPIFTQRLQPVVQKSLRRRPDTSMRLLT 832

  Fly   743 AAAVSRKSVTEDRSQRGTSKPITRPLSLVPKLDEDVLAQLPEDIRLEVIANREEH--LCIAEYDG 805
            ||..|.: ...|..|:.......:...||..:.|      ||    |.:.:||.|  :.:..:.|
  Fly   833 AAGGSNQ-YQIDAGQKAFGARQCQQCGLVYTVHE------PE----EELLHREYHNSIHVLRFKG 886

  Fly   806 YRSPQYPTLRSPPLLNPYVTTNVSPLKATD--LKPSTSRAAVARLQKRKE 853
            :....              ..:|.|..|:|  :.....||..|||.:.::
  Fly   887 WIDED--------------IVSVYPEWASDGRIIRINERAPTARLDRLRD 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 96/596 (16%)
Rev1_C 890..985 CDD:213388
ecoNP_648106.1 zf-C2H2_3 839..878 CDD:290589 11/49 (22%)
NAT_SF 945..>1008 CDD:173926
Acetyltransf_13 982..1043 CDD:290591
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452759
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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