DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and Polh

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001101674.1 Gene:Polh / 316235 RGDID:1309893 Length:689 Species:Rattus norvegicus


Alignment Length:734 Identity:153/734 - (20%)
Similarity:252/734 - (34%) Gaps:244/734 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 IDMDCFFVSVGLRTRPELRGLPIAVTHS---KGGNAATDVPVHPQADRKAELELFAQRFEHHFHD 339
            :|||||||.|..|..|.||..|.||...   |||.                              
  Rat    12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGG------------------------------ 46

  Fly   340 GDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY-------DFEGY 397
                               |.:.|||||..|:...|:...|.||||:|.....       :...|
  Rat    47 -------------------IIAVSYEARAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKY 92

  Fly   398 KEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHE---------LNVDVM-------------- 439
            :|.:..:.:.::.:.: ||..|.||.:::||:...|         ::.|::              
  Rat    93 REASVEVMEIMSHFAV-IERASIDEAYIDLTNAVQERLEKLQGQPVSADLLPSTYIEGLPRGPAV 156

  Fly   440 -------------------------------------AFVSHLRQEVYSKTGCPCSAGVAGNKLL 467
                                                 ..|..:|..:..|||..||||::.||:|
  Rat   157 EDTVEKEDIRKQGLLQWLGSLEKDDPTSPDLRLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVL 221

  Fly   468 ARMATKEAKPNGQFLLD--SSNDILAYMAPMSLDLLPG-VGSSISHKLKQAGLNNCGDVQNTTLE 529
            |::|....|||.|.|:.  |...:.:.|....:..|.| :|:|:...|   |:...||:...|..
  Rat   222 AKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIDVL---GVEYMGDLTQFTEA 283

  Fly   530 KMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNF--GIRFTNSVECEQFLCQLSEEVT 592
            :::...|:|.|..|:..||||:..|:...|:.||:....||  ........:.:.:|.||:.|:.
  Rat   284 QLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELE 348

  Fly   593 KRLVEIR----RKARSINLKIMVR------AAEAPVETSKYMGHGV----------CDIINKSSL 637
            :||.:.|    |.|..:.:.|.|.      :.......::|..|.:          |   |.|.:
  Rat   349 ERLTKDRTDNGRVATQLVVSIRVEGDKRLSSLRRCCALTRYDAHKMSQDAFATIRNC---NTSGV 410

  Fly   638 ---------------IKYATDDVNVITTVVLDLMKDADIPPD-ELRGLGIHLTRLEDANEVRKE- 685
                           .|::.......|.:.:.|..|:...|. .....|........|....|| 
  Rat   411 QTEWSPPLTMLFLCATKFSASAPPACTDITVFLSSDSGCQPKVPAASSGTRTQEPGPAAPTSKEA 475

  Fly   686 -NNIKEMF---GKMSEMRKDKPIPQGAVGDKSIGDDKVNKP-LVFENKPKPREPRNVLSMLTAAA 745
             .:::..|   .|...||:...:|.....:||     .:|| |:|:....|.         |.:.
  Rat   476 ATSLESFFQKAAKRQRMRETSFVPPKVAVEKS-----SSKPSLLFQTSGSPG---------TKSF 526

  Fly   746 VSRKSVT---EDRSQRGTSKPITRPLSLVPKLDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYR 807
            ..:||:.   .:.|......|.....::.|       ::||.| |.:..|:.|| :|        
  Rat   527 FKQKSLLLQHTELSNAAAPCPPQASSAVQP-------SRLPTD-RADSRASCEE-VC-------- 574

  Fly   808 SPQYPTLRSPPLLNPYVTTNVSPLKATDL----KPSTSRAAVARLQKRKERKEQEHYIRSDQIVA 868
                     .|:.:..|:|.|:....:.|    :..|.|||                  .||::.
  Rat   575 ---------KPVSSKAVSTEVNVAGNSSLAYNSQEMTQRAA------------------EDQVLC 612

  Fly   869 DYID------DLPDFVNPH 881
            :..|      |:|:.::.|
  Rat   613 EKCDSLVPVWDMPEHLDYH 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 109/508 (21%)
Rev1_C 890..985 CDD:213388
PolhNP_001101674.1 DinP 8..>325 CDD:223466 86/365 (24%)
PolY_Pol_eta 10..427 CDD:176456 103/470 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0389
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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