DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rev1 and polk-1

DIOPT Version :9

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001122692.1 Gene:polk-1 / 176209 WormBaseID:WBGene00017696 Length:596 Species:Caenorhabditis elegans


Alignment Length:607 Identity:132/607 - (21%)
Similarity:227/607 - (37%) Gaps:211/607 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 LERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQRFEH 335
            |.|..:.||||.:|.:|.:|..|.||.:|:||     |::|.                       
 Worm    81 LSRDCVCIDMDAYFAAVEMRDNPALRTVPMAV-----GSSAM----------------------- 117

  Fly   336 HFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGM--FVGQALKLCPELKTIPYDFEGYK 398
                                   :::.:|.||..|:|.||  |:..  ||||.|..:|.::..|.
 Worm   118 -----------------------LSTSNYLARRFGVRAGMPGFISN--KLCPSLTIVPGNYPKYT 157

  Fly   399 EVAFTLYDTVAQYTLNIEAVSCDEMFVELTDL--------------------------------- 430
            :|:........:|..::..:|.||.|::|||.                                 
 Worm   158 KVSRQFSQIFMEYDSDVGMMSLDEAFIDLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTL 222

  Fly   431 ---------------AHELNVDVMAF-------VSHLRQEVYSKTGCPCSAGVAGNKLLARMATK 473
                           :.::..|.:.|       |..:|..|...||..||||:|.|.:||::.:.
 Worm   223 EDLKIEESICPKCEKSRKIYYDHVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSD 287

  Fly   474 EAKPNGQFLLDS-SNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKVLGK 537
            ..|||||::|:: .|.|:.::..:.:..:.|:|.....:||...:...||:              
 Worm   288 LNKPNGQYVLENDKNAIMEFLKDLPIRKVGGIGRVCEAQLKAMDIQTVGDM-------------- 338

  Fly   538 KLGQNLFQNC-------------RGIDDRPLAYEQIRKTVSAEMNFG--IRFTNSVECEQFLCQL 587
            .|.:||:..|             .|:..||...:..||::|.|..|.  ..|...:|..|.:|::
 Worm   339 NLKKNLYPLCFTPLSQESFLRTALGLPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRM 403

  Fly   588 SEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKS---SLIKYATDDVNVIT 649
            .||..::...:..|..::.||:           |.:      |::.:|   |.:..:.:|:...:
 Worm   404 LEEDVRKSGIVGGKTVTLKLKL-----------SSF------DVLTRSLTPSDVVKSLEDIQKFS 451

  Fly   650 TVVLDLMKDADIPPDELRGLGIHLTRL---EDANEVRKENNIKEMFGKMSEMRKDKPIPQGAVGD 711
            ..:|:..|.     .|:|.||:.|::|   ||  |.::...|.|.:.:     |...| |...|.
 Worm   452 LELLEKEKG-----KEIRLLGVRLSQLIFEED--EKKRSKTITEFWNE-----KKLQI-QNLQGS 503

  Fly   712 KSIGDDKVNKPLVFENKPKP---REPRNVLSM-------------------LTAAAVSRKSVTED 754
            :::.||.|   ::.:.:|.|   .:..|.|.:                   |...:|..||    
 Worm   504 ENVDDDDV---IMMDTRPCPICGTDVENRLDVMNCHVDECILKVQNDDGPELICVSVENKS---- 561

  Fly   755 RSQRGTSKPITRPLSLVPKLDE 776
                 |.|| .||.:...||.|
 Worm   562 -----TQKP-ERPSTKKRKLQE 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 103/480 (21%)
Rev1_C 890..985 CDD:213388
polk-1NP_001122692.1 PolY_Pol_IV_kappa 86..473 CDD:176459 101/475 (21%)
PRK02406 90..473 CDD:235035 99/471 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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