DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and polh-1

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_497480.2 Gene:polh-1 / 175337 WormBaseID:WBGene00018721 Length:584 Species:Caenorhabditis elegans


Alignment Length:577 Identity:127/577 - (22%)
Similarity:213/577 - (36%) Gaps:186/577 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 LERYVMHIDMDCFFVSVGLRTRPELRGLP-IAVTHSKGGNAATDVPVHPQADRKAELELFAQRFE 334
            ::|.:..||||||:..|..|..|.|.|.| |.|.||:.|                          
 Worm     1 MKRVISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQG-------------------------- 39

  Fly   335 HHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKT--IPY----- 392
                       :..|         |.:.|||||..|::.||.|.:|...||::..  :|.     
 Worm    40 -----------IEGG---------ILAVSYEARPFGVKRGMTVAEAKLKCPQISICHVPIGEYVD 84

  Fly   393 --DFEGYKEVAFTLYDTVAQY--TLNIEAVSCDEMFVEL-------------------------- 427
              |.:.|::.:..::..:..|  .:.||..|.||.|::|                          
 Worm    85 KADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFLDLSAYTNQKLQELRENEGLEEFLQAAIT 149

  Fly   428 ----TDLA--------HELNVDVM--------------------AFVSHLRQEVYSKTGCPCSAG 460
                |.||        ..|..||:                    ..|..:||:::.:|...||||
 Worm   150 YLPTTHLATGEDVKENEHLREDVLLEYIENARNCTENLLLLIAAVTVEQIRQQIHEETQFFCSAG 214

  Fly   461 VAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLP-----GVGSSISHKLKQAGLNNC 520
            |..||::|::.....||..|.|:.     ..|:..: |.|.|     |.|..:.::::       
 Worm   215 VGNNKMMAKLVCARHKPRQQTLIP-----WFYVREI-LRLTPIGDVRGFGGKMGNRIQ------- 266

  Fly   521 GDVQNTTLEKMEKVLGKKLGQ--NLFQN--------CRGIDDRPLAYEQIRKTVSAEMNF--GIR 573
             ::.|.||  |.::|...:.|  ..|.|        ..|..|.|:...:...:::...||  .:.
 Worm   267 -EMLNITL--MGELLEVDISQLIETFPNQHEYLRSVAEGHCDEPVRPRKESSSIAVSKNFPGKLS 328

  Fly   574 FTNSVECEQFLCQLSEEVTKRL----VEIRRKARSINLKIMVRAAEAPVETSKYMGH-------- 626
            ..:.:|.:::|..|::|:.|||    .|.:|.|.::...::....: |.:|.|...:        
 Worm   329 IRSVLELKKWLDGLTKELAKRLATDQAENKRTAENLVYSLLTEDGK-PQKTLKITSYHPDTLFEQ 392

  Fly   627 --GVCDIINKSSLIKYATDDVNVITTVVLDLMKDA-----DIPPDELRGLGIHLTRLEDANEVRK 684
              .....:||::..|  .:|....|..:|::...|     .||... |.:...|...:.....||
 Worm   393 IWAAMKGLNKTNATK--NEDSGPWTPPILNISLSATRFQPGIPAQN-RSIHEWLYEKKTRKSRRK 454

  Fly   685 -----ENNIKE--MFGKMSE-MRKDKPIPQ--GAVGD----KSIGDDKVNKPLVFEN 727
                 ||:.:|  :|.:..| ::|..|.|:  |..||    .|..||.|.:|...:|
 Worm   455 AAIYDENDGREDVIFVEPPEKLKKPNPTPKSTGTDGDFIVLGSDSDDDVVQPKTDDN 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 108/510 (21%)
Rev1_C 890..985 CDD:213388
polh-1NP_497480.2 PolY 7..426 CDD:452909 102/483 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.