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Protein Alignment MED30 and med30
DIOPT Version :9
Sequence 1: | NP_612046.1 |
Gene: | MED30 / 38078 |
FlyBaseID: | FBgn0035149 |
Length: | 318 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_957011.1 |
Gene: | med30 / 393690 |
ZFINID: | ZDB-GENE-040426-1676 |
Length: | 174 |
Species: | Danio rerio |
Alignment Length: | 187 |
Identity: | 64/187 - (34%) |
Similarity: | 107/187 - (57%) |
Gaps: | 38/187 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 143 QQQQQLNPVAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEVFASLKGI 207
|||||.... :::|...|.|:||||||||..|..|:|..|:.:
Zfish 12 QQQQQTQAA-----------------------RDVNTASLCRIGQETVQDIVLRTMEIFQLLRNM 53
Fly 208 Q--------PTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCND--AGMDYMSAESLIPYRDEP 262
| |.:|::... |:||:.||:.:||:::|::|:|||: ||::.:.:|.||||.::.
Zfish 54 QLPNGVTYHPNTHQDRLG--KLQEHLRTLSVLFRKLRLVYDKCNENCAGLEPIPSEQLIPYVEDD 116
Fly 263 EPRIEPSLCDEYRKVLQENHELIET---VKLKNRQLREIIDRTRIIIWEINTMLAMR 316
..::|..:.::.|...:|..|::|. :|.||:||:.|:|:.|.:|||||:|||:|
Zfish 117 SSKLEDRMANQLRAASEERREVLEVNKKLKQKNQQLKMIMDQLRNLIWEINSMLAVR 173
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
MED30 | NP_612046.1 |
Med30 |
178..315 |
CDD:288208 |
57/149 (38%) |
med30 | NP_957011.1 |
Med30 |
24..172 |
CDD:288208 |
57/149 (38%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C170574290 |
Domainoid |
1 |
1.000 |
112 |
1.000 |
Domainoid score |
I6146 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
1 |
1.000 |
- |
- |
|
|
Homologene |
1 |
1.000 |
- |
- |
|
H12329 |
Inparanoid |
1 |
1.050 |
107 |
1.000 |
Inparanoid score |
I4902 |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1549016at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0006305 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm25164 |
orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_108111 |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR31705 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R4651 |
SonicParanoid |
1 |
1.000 |
- |
- |
|
X4589 |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
13 | 12.930 |
|
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