DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3402 and Sdcbp2

DIOPT Version :9

Sequence 1:NP_612045.1 Gene:CG3402 / 38077 FlyBaseID:FBgn0035148 Length:123 Species:Drosophila melanogaster
Sequence 2:NP_001020863.1 Gene:Sdcbp2 / 311532 RGDID:1307709 Length:296 Species:Rattus norvegicus


Alignment Length:104 Identity:30/104 - (28%)
Similarity:39/104 - (37%) Gaps:32/104 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 REILKCGFKIGGGIDQDYKKSPQGYT-------DYGIYVTEVHEGSPAARAGLRIHDKILQCNGY 91
            |||..|             |..:|.|       |.|::|..|...:||:..|||..|:|||.:|.
  Rat   111 REIHLC-------------KDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGC 162

  Fly    92 DFT-MVTHK-----------KAVSYIRKNPILNMLVARK 118
            |.. ..|||           |.|..:|..|....:...|
  Rat   163 DCAGWSTHKAQKALKKASAEKIVMVVRDRPFQRTVTMHK 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3402NP_612045.1 PDZ_signaling 21..116 CDD:238492 29/100 (29%)
Sdcbp2NP_001020863.1 PDZ_signaling 110..189 CDD:238492 27/90 (30%)
PDZ_signaling 195..268 CDD:238492 1/7 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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