DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3402 and pdzrn3

DIOPT Version :10

Sequence 1:NP_612045.1 Gene:CG3402 / 38077 FlyBaseID:FBgn0035148 Length:123 Species:Drosophila melanogaster
Sequence 2:XP_002938429.1 Gene:pdzrn3 / 100496746 XenbaseID:XB-GENE-5817964 Length:1062 Species:Xenopus tropicalis


Alignment Length:114 Identity:38/114 - (33%)
Similarity:59/114 - (51%) Gaps:22/114 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GTAMECLSIPITLHKEKDYDQEGREILKCGFKIGGG---ID-QDYKKSPQGYTDYGIYVTEVHEG 71
            |...|..::.:.||:|..         ..||.|.||   :| ||      |.:..||||:::.:.
 Frog   237 GKGEESKAMTLVLHRESG---------SLGFNIIGGRSCVDNQD------GPSSEGIYVSKIVDS 286

  Fly    72 SPAAR-AGLRIHDKILQCNGYDFTMVTHKKAVSYIR--KNPILNMLVAR 117
            .|||: .||:|||:|::.||.|.:..||.:||...:  |.||:..::.|
 Frog   287 GPAAKEGGLQIHDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRR 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3402NP_612045.1 PDZ_TAX1BP3-like 20..117 CDD:467265 35/103 (34%)
pdzrn3XP_002938429.1 RING-HC_LNX3 12..58 CDD:438378
PDZ1-PDZRN4-like 243..334 CDD:467199 35/105 (33%)
PDZ2-PDZRN4-like 414..502 CDD:467200
Blue background indicates that the domain is not in the aligned region.

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