DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13893 and retm

DIOPT Version :10

Sequence 1:NP_612042.3 Gene:CG13893 / 38074 FlyBaseID:FBgn0035146 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster


Alignment Length:396 Identity:94/396 - (23%)
Similarity:171/396 - (43%) Gaps:63/396 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LPEISEEQRAILEKFRKQMD--DALVGTHDDYFLVRWLRARKWNLEAAEKMLRASLKTRAMWNVD 67
            |.::|..|.:.|.:.||.:|  |.|........::|:|.||.|::..|..||..||:.|....:|
  Fly   214 LGQLSPMQESKLLELRKMLDGVDDLERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRID 278

  Fly    68 N-IEKWDPPKALQEYLPYGLMGYDNEGSPVLVCPFANFDMWGMMHCVTRFEFQKYLVL--LLERF 129
            . :.::..|..:.|:.|.|....|.:|.||.:....:.|:.|::         |.|.:  ||...
  Fly   279 ALLAEYSKPAVVVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLL---------KSLGMDGLLRLA 334

  Fly   130 MKIAYDQSQKHGWRARQL-------VVFFDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKM 187
            :.|..:..||....|.:|       .:..|::.:::: :.|||..:.:::.::..|.|:||.:..
  Fly   335 LHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMR-HLWRPGIKALLNIIETVERNYPETMGR 398

  Fly   188 CYIINAPKLFSVAFNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDRNG 252
            ..::.||::|.:|:.||..|:||:|.||.:.|.......::.|..:::.:..|...||       
  Fly   399 VLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGG------- 456

  Fly   253 DPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVP--------------------------KG 291
              .||.::..||.:|:.||...|.:..| |.|.|::|                          |.
  Fly   457 --PCKTMIHEGGLVPKTLYKMNSLEDHD-DEVTAELPTTAAAQALVPGKRLSANQQHDHRNLYKS 518

  Fly   292 DKLKLHFK-----VNVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEIG 351
            ..||..|.     .|.:.:.:|:|:|.....|:.|.:|.|..:..||...........:.::.:.
  Fly   519 VDLKAGFAHELLIRNEDPKSVLTWDFDVMRNDLHFTLYRVTQELPEKNDSAVSYFDLQDFVEGVN 583

  Fly   352 YISTRP 357
            |....|
  Fly   584 YFREEP 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13893NP_612042.3 CRAL_TRIO_N 16..57 CDD:215024 14/42 (33%)
CRAL_TRIO 81..245 CDD:459890 40/172 (23%)
GPCR_chapero_1 303..381 CDD:480652 11/55 (20%)
retmNP_001260132.1 PRELI 17..173 CDD:398400
CRAL_TRIO_N 222..268 CDD:215024 14/45 (31%)
CRAL_TRIO 293..456 CDD:459890 40/172 (23%)
Blue background indicates that the domain is not in the aligned region.

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