DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED14 and RGR1

DIOPT Version :9

Sequence 1:NP_728534.2 Gene:MED14 / 38073 FlyBaseID:FBgn0035145 Length:1555 Species:Drosophila melanogaster
Sequence 2:NP_013172.1 Gene:RGR1 / 850760 SGDID:S000004061 Length:1082 Species:Saccharomyces cerevisiae


Alignment Length:670 Identity:142/670 - (21%)
Similarity:259/670 - (38%) Gaps:170/670 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 INTMSMSVLIDFIIQRTYHELTVLAELLPRKTDMERKVEIYNYAARTRHL---------FTRLNA 87
            ||.:|::::|..:...|..|   ||:.:  ||::..:....|.|.:.|.|         |.:|..
Yeast    87 INQVSLALVIRNLTVFTMKE---LAQYM--KTNVHTQANEPNSAKKIRFLQLIIFLRTQFLKLYV 146

  Fly    88 LVKWGNSVSKVDKSSQIMSFLDKQNMLFVETADM-------LARMSRETLVRARLPNFHIPAAVE 145
            ||||..::    |.:.....:|..|  :..|.:|       ..:.|..::..|:|||..:..|:|
Yeast   147 LVKWTRTI----KQNNFHVLIDLLN--WFRTTNMNVNNCIWALKSSLNSMTNAKLPNVDLVTALE 205

  Fly   146 VLTTGTYNRLPT------CIRERI--------VPADAITPAEKRQTLLRLNQVIQHRLVTGKLLP 196
            ||:.|..| |||      .:...:        ||...|.     |.|..||..:..::....:..
Yeast   206 VLSLGRPN-LPTHNFKLSGVSNSMDMVDGMAKVPIGLIL-----QRLKDLNLTVSIKIALMNIPK 264

  Fly   197 QMREFRIRNGRVTFEVKHEFSVSLTVMGDNPTVPWRLLDIDVLV--------------------- 240
            .:..:.|:|||:.|.|.:||.:.|:.:  |...|...:|:.:|.                     
Yeast   265 PLNSYHIKNGRIYFTVPNEFEIQLSTV--NRQSPLFFVDLKLLFNTEAEQTVSAVTEATSTNGDS 327

  Fly   241 ---EDKETGDGKSLVHPLQVNYIHQLIQARLVENPNALSEVYNCLHYFCQSLQLEVLYTQTLRL- 301
               |:..:.:|.:|  ||....:.:||...|:::.:.|..:||.||.:..:|||.:::.:.|:| 
Yeast   328 ENNEENSSSNGNNL--PLNKPRLEKLINEILLKSNDPLLSLYNFLHKYVLTLQLYMVHREFLKLA 390

  Fly   302 NYERLDDNNITVEEYVPGVKLTVSYWRDLKSE------LGYRLTVQS-----DPSEIGRPLAVVH 355
            |..:...:|:..........:||.||.:.|.:      :|.:.|.:|     |.....|      
Yeast   391 NGGKFSKSNLIHNYDSKKSTITVRYWLNGKMDSKGKITIGIQRTTESLILKWDNQSASR------ 449

  Fly   356 VPSLGAKESAEVADRAVRS-EHLSMERLIVHTVYIRSVSRLSDLKLEFQAFLKDVDCEFNLQGTP 419
                 ||....:.:..|.: |.:..|.:..|...|||.....|:   ||...::.|         
Yeast   450 -----AKNMPVIYNNIVSNIEGILDEIMFNHARIIRSELLARDI---FQEDEENSD--------- 497

  Fly   420 AILTVPVLSPCLRAEQIHITIDTHTGMFRCHVPKHLDCPIMEEMQDCLNGDR--SKLPALLSELR 482
             :|...:.:.|:....|.:.||..:|.|....|    .|::......:|...  .:|..:|.:|:
Yeast   498 -VLLFQLPTTCVSMAPIQLKIDLLSGQFYFRNP----TPLLSNYASKINRAEGPEELARILQQLK 557

  Fly   483 F---------------WITHR--RCDKTLQHLPATATETLPFLVQPDQEILQPG----------- 519
            .               |...|  :.||.::....|..|::  :.:.|.:....|           
Yeast   558 LDKIIHVLTTMFENTGWSCSRIIKIDKPIRTQVNTGGESV--VKKEDNKYAIAGNSTTNSDVSLL 620

  Fly   520 -RHKIYVKLHRHP-NIVLVVQ-LKEKTTMPNEMEYTFHLGFVAYQKDE--LDVIDDS---AMQLV 576
             :..::::|...| |..|::. :..||:...|.    .:|.:..|:.:  |..:|:|   .::|.
Yeast   621 LQRDLFIRLPHWPLNWYLILSIISSKTSCVVEK----RIGKIVSQRGKWNLKYLDNSNVMTVKLE 681

  Fly   577 SIVAQPHSDIPKCYTKLMRL 596
            ||.          |.|:|.|
Yeast   682 SIT----------YQKIMIL 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED14NP_728534.2 Med14 34..224 CDD:285801 53/219 (24%)
RGR1NP_013172.1 Med14 89..292 CDD:400802 53/221 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344249
Domainoid 1 1.000 45 1.000 Domainoid score I3098
eggNOG 1 0.900 - - E1_KOG1875
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005245
OrthoInspector 1 1.000 - - oto99915
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12809
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R704
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.960

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