DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kah and scrt1b

DIOPT Version :9

Sequence 1:NP_612040.1 Gene:Kah / 38072 FlyBaseID:FBgn0035144 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001014369.1 Gene:scrt1b / 541533 ZFINID:ZDB-GENE-050327-72 Length:279 Species:Danio rerio


Alignment Length:249 Identity:115/249 - (46%)
Similarity:138/249 - (55%) Gaps:44/249 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 PLPLYASSDDDSNYYSHKVFDRRKLRRCTISDSNSCASSSSSSTSSRQSSEDHLGLQGHSSVHHH 101
            |.|:|     |||:..:..           .||:...|..|..||..        :.|.::|...
Zfish    63 PGPIY-----DSNHSDYGA-----------PDSDQPDSPQSEITSGY--------INGDNAVSEG 103

  Fly   102 H---------GEQGEILNSTSLLEDEHICPECGKKYSTSSNLARHRQTHRSIMDKKARHCPYCEK 157
            :         |.....:.|.|.....|.|.||||.|:|||||:||:|||||:..|.|:.||.|.|
Zfish   104 YTVDAFFITDGRSRRKVISGSRTLQRHTCNECGKTYATSSNLSRHKQTHRSLDSKMAKKCPTCGK 168

  Fly   158 VYVSMPAYSMHVRTHNQGCECQFCGKRFSRPWLLQGHIRTHTGEKPFKCGVCEKAFADKSNLRAH 222
            |||||||.:||:.||:...:|..|||.||||||||||:|:|||||||.|..|.|||||:||||||
Zfish   169 VYVSMPAMAMHLLTHDLKHKCDICGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAH 233

  Fly   223 IQTHSNTKPHTCARCGKAFALKSYLYKHEESSCMKNRGGVPGSGAASGNRPPSS 276
            :||||..|...|.||.|.|.|||||.||.||:|.|        ||.|   |.||
Zfish   234 MQTHSAFKHFKCKRCNKTFVLKSYLNKHYESACFK--------GAFS---PHSS 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KahNP_612040.1 zf-C2H2 119..141 CDD:278523 15/21 (71%)
C2H2 Zn finger 121..141 CDD:275368 14/19 (74%)
zf-C2H2 176..198 CDD:278523 15/21 (71%)
C2H2 Zn finger 178..198 CDD:275368 15/19 (79%)
zf-H2C2_2 191..214 CDD:290200 16/22 (73%)
zf-C2H2 204..226 CDD:278523 15/21 (71%)
C2H2 Zn finger 206..226 CDD:275368 14/19 (74%)
zf-H2C2_2 218..242 CDD:290200 14/23 (61%)
C2H2 Zn finger 234..250 CDD:275368 10/15 (67%)
scrt1bNP_001014369.1 zf-C2H2 130..152 CDD:278523 15/21 (71%)
C2H2 Zn finger 132..152 CDD:275368 14/19 (74%)
C2H2 Zn finger 163..180 CDD:275371 12/16 (75%)
COG5048 187..>263 CDD:227381 52/75 (69%)
zf-C2H2 187..209 CDD:278523 15/21 (71%)
C2H2 Zn finger 189..209 CDD:275368 15/19 (79%)
C2H2 Zn finger 217..237 CDD:275368 14/19 (74%)
zf-C2H2 217..237 CDD:278523 14/19 (74%)
zf-H2C2_2 229..253 CDD:290200 14/23 (61%)
C2H2 Zn finger 245..261 CDD:275368 10/15 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581359
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D545011at33208
OrthoFinder 1 1.000 - - FOG0000984
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24388
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3156
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.880

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