DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kah and snai2

DIOPT Version :9

Sequence 1:NP_612040.1 Gene:Kah / 38072 FlyBaseID:FBgn0035144 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_989424.1 Gene:snai2 / 395065 XenbaseID:XB-GENE-487371 Length:266 Species:Xenopus tropicalis


Alignment Length:250 Identity:106/250 - (42%)
Similarity:136/250 - (54%) Gaps:33/250 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PIPEELYNLTQLAEVTLSVG---PLVTDEVKPLPLYASSDDDSNYYSHKVFDRRKLRRCTISDSN 70
            |.| |||:....:.:|:..|   |.:..::.||..|.||                |.|.      
 Frog    43 PQP-ELYSSVAYSPITVWTGLLHPPLPSDLSPLSGYPSS----------------LGRV------ 84

  Fly    71 SCASSSSSSTSSRQSSEDHLGLQGHSSVHHHHGEQGEILNSTSLLEDEHICPECGKKYSTSSNLA 135
                  |....|..||:||.|.:...| ......|.::.:|.::..::..|..|.|.|||.|.||
 Frog    85 ------SPPPQSDTSSKDHSGSESPIS-DEEERLQTKLSDSHAIEAEKFQCSLCSKTYSTFSGLA 142

  Fly   136 RHRQTHRSIMDKKARHCPYCEKVYVSMPAYSMHVRTHNQGCECQFCGKRFSRPWLLQGHIRTHTG 200
            :|:|.|.....:|:..|.||||.|||:.|..||:|||...|.|:.|||.||||||||||||||||
 Frog   143 KHKQLHCDAQSRKSFSCKYCEKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTG 207

  Fly   201 EKPFKCGVCEKAFADKSNLRAHIQTHSNTKPHTCARCGKAFALKSYLYKHEESSC 255
            ||||.|..|.:||||:||||||:||||:.|.:.|..|.|.|:..|.|:|||||.|
 Frog   208 EKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGC 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KahNP_612040.1 zf-C2H2 119..141 CDD:278523 11/21 (52%)
C2H2 Zn finger 121..141 CDD:275368 11/19 (58%)
zf-C2H2 176..198 CDD:278523 17/21 (81%)
C2H2 Zn finger 178..198 CDD:275368 16/19 (84%)
zf-H2C2_2 191..214 CDD:290200 17/22 (77%)
zf-C2H2 204..226 CDD:278523 14/21 (67%)
C2H2 Zn finger 206..226 CDD:275368 13/19 (68%)
zf-H2C2_2 218..242 CDD:290200 13/23 (57%)
C2H2 Zn finger 234..250 CDD:275368 6/15 (40%)
snai2NP_989424.1 DUF4764 82..>160 CDD:292583 24/90 (27%)
C2H2 Zn finger 128..148 CDD:275370 11/19 (58%)
C2H2 Zn finger 159..179 CDD:275368 12/19 (63%)
C2H2 Zn finger 185..205 CDD:275368 16/19 (84%)
zf-H2C2_2 198..221 CDD:290200 17/22 (77%)
zf-C2H2 211..233 CDD:278523 14/21 (67%)
C2H2 Zn finger 213..233 CDD:275368 13/19 (68%)
zf-H2C2_2 225..250 CDD:290200 14/24 (58%)
C2H2 Zn finger 241..257 CDD:275368 6/15 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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