DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kah and rsv1

DIOPT Version :10

Sequence 1:NP_612040.1 Gene:Kah / 38072 FlyBaseID:FBgn0035144 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_596183.1 Gene:rsv1 / 2541322 PomBaseID:SPBP4H10.09 Length:428 Species:Schizosaccharomyces pombe


Alignment Length:316 Identity:70/316 - (22%)
Similarity:112/316 - (35%) Gaps:78/316 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 ECQFCGKRFSRPWLLQGHIRTHTGEKPFKCGV--CEKAFADKSNLRAHIQTHSNTKPHTCARCGK 239
            ||.||.:.|.|......|||:|||||||:|..  |:|.|..:..|..|::||             
pombe     5 ECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH------------- 56

  Fly   240 AFALKSYLYKHEESSCMKNRGGVPGSGAASGNRPPSSPKRQQAEVTSGTIS----------ALAP 294
               |:..|...|::..: |....|.|.............:.|.:...|:|:          ::|.
pombe    57 ---LRKALVTPEQTLDV-NLHKAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAY 117

  Fly   295 GSPAAAVCAASD-SAKSTLANK------------LLQKEKDRRQAAMAFQGFPAGPEVTAYSHAT 346
            ..|.:...:.:| .|:|.|..|            |.:|.:|..:.....:...|.....:.|::.
pombe   118 AKPTSVSLSPTDLQAQSKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNSK 182

  Fly   347 SAQEEYEKFKRINVIQPKVMPHRVPSLYQDLLPNRHVPLALPLAMPYHFQGQATST-------GQ 404
            |...|..|.:..||:.| :..:.||...|: .|....|:.|......:..||.|.|       .:
pombe   183 SPPSENRKNRLQNVLSP-IASNNVPDFNQN-YPTESNPMFLSTPRFQNTNGQRTLTVPVSVWDAR 245

  Fly   405 SDPTS-----------------------VQEQPVDFSPKNNFTHSAKTS----PFE 433
            ..|||                       |.:..:::...|.:.|....|    ||:
pombe   246 QPPTSSRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYPHPTGISLPFYPFD 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KahNP_612040.1 C2H2 Zn finger 121..141 CDD:275368
zf-C2H2 176..198 CDD:395048 9/20 (45%)
C2H2 Zn finger 178..198 CDD:275368 8/19 (42%)
zf-H2C2_2 191..214 CDD:463886 13/24 (54%)
zf-C2H2 204..226 CDD:395048 7/23 (30%)
C2H2 Zn finger 206..226 CDD:275368 6/21 (29%)
C2H2 Zn finger 234..250 CDD:275368 2/15 (13%)
rsv1NP_596183.1 COG5048 1..427 CDD:227381 70/316 (22%)
C2H2 Zn finger 6..26 CDD:275368 8/19 (42%)
C2H2 Zn finger 34..56 CDD:275368 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.

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