DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hipk and prpf4b

DIOPT Version :9

Sequence 1:NP_001369036.1 Gene:Hipk / 38070 FlyBaseID:FBgn0035142 Length:1409 Species:Drosophila melanogaster
Sequence 2:XP_002936474.1 Gene:prpf4b / 779480 XenbaseID:XB-GENE-988306 Length:995 Species:Xenopus tropicalis


Alignment Length:537 Identity:144/537 - (26%)
Similarity:242/537 - (45%) Gaps:82/537 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 FCSGLGAGLSVRATSFYGDQTVTATTDGTRHQEQQQQQLQQQQQQHI--------LRQPATSAST 81
            |...|..|:.:...|  .|..:   .|....:|.::..::|::||.:        :.:.:..:..
 Frog   494 FKGSLSEGMKIEQES--SDDNL---EDFDVEEEDEEALIEQRRQQRLAIVQKYRYINEDSNMSVP 553

  Fly    82 SSVAAAATSKRKRQTDCD--------------CGCVDSYNSSHGPPVQQDSSAAAGAGSVGSKAG 132
            |..::..:|.|.|....|              ...:|::.:|  ...:|:.......|::..|. 
 Frog   554 SEPSSPQSSTRSRSPSPDDILERVAADVKEYERENIDTFEAS--VKAKQNLMTEQNNGAMQKKL- 615

  Fly   133 SGPGPDGIGPISSL-----KTAHTKVATSGGHANTQPPSKRSSSGADGDYQLVQHEVLYSLSAEY 192
              ..||.......:     .:|..:.|..|......|..:.:.:.::|.|::...|:   |...|
 Frog   616 --LAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDSEGYYRVNIGEI---LEKRY 675

  Fly   193 EVLEFLGRGTFGQVVKC--WKRGTSEIVAIKILKNHPSYARQGQIEVSILSRLSQENADE-FNFV 254
            .|..:.|:|.|..||:.  ..|...| ||:||::|:....:.|..|:..|.:|:..:.|: |:.:
 Frog   676 NVYGYTGQGVFSNVVRARDMARANQE-VAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCL 739

  Fly   255 RAFECFQHKNHTCLVFEMLEQNLYDFLKQ-NKFSPLPLKYIRPILEQVLTALLKLKQLGLIHADL 318
            |.|..|.||.|.|||||.|..||.:.||: .|...|.:|.:|...:|:..||..||:..::|||:
 Frog   740 RLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADI 804

  Fly   319 KPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCNTYLQSRYYRAPEIILGLPFCEAIDMWSLGCV 383
            ||:||::.:   ....:|:.||||||||:......||.||:|||||||:|..:...|||||:||.
 Frog   805 KPDNILVNE---SKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKMYDYGIDMWSVGCT 866

  Fly   384 VAELFLGWPLYPGSSEFDQIRYISQTQG-LPTEHMLNSASKTS------KFFYRDVDSTYPFWRL 441
            :.||:.|..|:||.:....::.....:| :|.:.:.....|..      .|.|.:||        
 Frog   867 LYELYNGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDANLNFMYIEVD-------- 923

  Fly   442 KTTEEHEAETNTKSKEARKYIFNCLDDIGQVNVPTDLEGGQLLAEKTDRREFI----DLLKRMLT 502
            |.||..:....:.....:..:             .||.|.|.|.|  |:|:.:    |||.::|.
 Frog   924 KVTEREKVTVMSTINPTKDLL-------------ADLIGCQRLPE--DQRKKVHQLKDLLDQILM 973

  Fly   503 IDQERRLTPAEALNHSF 519
            :|..:|::..:||.|.|
 Frog   974 LDPAKRISINQALQHPF 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HipkNP_001369036.1 STKc_HIPK 192..520 CDD:271113 114/343 (33%)
PHA03378 <1080..1327 CDD:223065
prpf4bXP_002936474.1 PTZ00108 <104..327 CDD:240271
SF-CC1 225..>351 CDD:273721
STKc_PRP4 674..991 CDD:271037 114/344 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.