Sequence 1: | NP_001261207.1 | Gene: | trh / 38065 | FlyBaseID: | FBgn0262139 | Length: | 1022 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_695262.6 | Gene: | epas1a / 566886 | ZFINID: | ZDB-GENE-030131-4490 | Length: | 843 | Species: | Danio rerio |
Alignment Length: | 814 | Identity: | 227/814 - (27%) |
---|---|---|---|
Similarity: | 326/814 - (40%) | Gaps: | 253/814 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 85 ELRKEKSRDAARSRRGKENYEFYELAKMLPLPAAITSQLDKASIIRLTISYLKLRDF--SGHGDP 147
Fly 148 PWTREASSSSKLKSAAIRRSPAVDLFEQHQGTHILQSLDGFALAVAADGRFLYISETVSIYLGLS 212
Fly 213 QVEMTGSSIFDYIHQADHSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGS 277
Fly 278 GTHGTNNPDVAASMTQASTSGYKGYDRSFCVRMKSTLTKRG--CHFKSSGYRASDATSNCNNGNN 340
Fly 341 ASNNAKNVKNPGSNYSVVLLLCKLRPQYTFSHSRKSQPPLLGMVALAIALPPPSVHEIRLECDMF 405
Fly 406 VTRVNFDLRVAHCEPRVSDLLDYSPEDLVNKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRL 470
Fly 471 MNKSGGYTWLQTCATVVCSTKNADEQNIICVNYVISNRENENMIL-------------------- 515
Fly 516 -----------------------DCCQLEPSP-DSI--------KHEEGLGNDKSSGSPG----- 543
Fly 544 -----GDASGEGNSHLSAGDMKLNSPKTDSEGHSHRGRGRSAAASHGSSMNSLTMIKDSPT---- 599
Fly 600 ----PLGVEIDSGVLPTTVATPVPAATPPVQS----TKRKRKTKA---SQHAEDQGQEQVISEQP 653
Fly 654 LPKL-PTMEQRDQ----------QPRSRLPSIVDEQPSSAADSAVKDLEQAMSKHLPSPAAVVSV 707
Fly 708 APPNTDFSADSLLKQQQQQQQLDPNEKSSTIQWIGTPYQQPPAPMPATALLRQLYANRESVIRAT 772
Fly 773 ARQTPTGVGPGVFYGDQQTGPLPTPPGSESSYEN 806 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trh | NP_001261207.1 | HLH | 85..137 | CDD:238036 | 36/51 (71%) |
PAS | 176..236 | CDD:214512 | 28/59 (47%) | ||
PAS | 180..>236 | CDD:279347 | 28/55 (51%) | ||
PAS | 403..505 | CDD:238075 | 45/101 (45%) | ||
PAS_3 | 415..502 | CDD:285623 | 40/86 (47%) | ||
epas1a | XP_695262.6 | HLH | 12..68 | CDD:238036 | 37/54 (69%) |
PAS | 86..147 | CDD:214512 | 29/70 (41%) | ||
PAS | 240..339 | CDD:238075 | 42/98 (43%) | ||
PAS_3 | 253..340 | CDD:285623 | 40/86 (47%) | ||
HIF-1 | 522..554 | CDD:288296 | 5/31 (16%) | ||
HIF-1a_CTAD | 806..842 | CDD:285931 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170592823 | |
Domainoid | 1 | 1.000 | 101 | 1.000 | Domainoid score | I6867 |
eggNOG | 1 | 0.900 | - | - | E1_KOG3558 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000232 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.740 |