DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trh and sima

DIOPT Version :9

Sequence 1:NP_001261207.1 Gene:trh / 38065 FlyBaseID:FBgn0262139 Length:1022 Species:Drosophila melanogaster
Sequence 2:NP_001287599.1 Gene:sima / 43580 FlyBaseID:FBgn0266411 Length:1593 Species:Drosophila melanogaster


Alignment Length:1070 Identity:255/1070 - (23%)
Similarity:387/1070 - (36%) Gaps:360/1070 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PTPGHPGSHMATMGSLGMPAVPFTHSWMVPTQDLCAMPPYNKMTGHQQPPGAGMHAQQ------- 76
            |.||               :.||..:.:.|......|..|:..  |||.|....:.|:       
  Fly    70 PAPG---------------SQPFVGAMLGPNMSSTGMQRYHPY--HQQQPQDAFYRQRGSLLNVA 117

  Fly    77 ----------------------QPLEPGIL---------ELRKEKSRDAARSRRGKENYEFYELA 110
                                  ||.:....         |.||||||||||.||.||...|.||:
  Fly   118 TPCRESRPWSYAYCYGYAPTNTQPCQFSQFVDIEDFMNNEKRKEKSRDAARCRRSKETEIFMELS 182

  Fly   111 KMLPLPAAITSQLDKASIIRLTISYLKLRDFSGHGDPPWTREASSSSK--LKSAAIRR--SPAVD 171
            ..|||.....:||||||::|:||::||:|:....  .|..|:.:...|  :::|..::  .|.::
  Fly   183 AALPLKTDDVNQLDKASVMRITIAFLKIREMLQF--VPSLRDCNDDIKQDIETAEDQQEVKPKLE 245

  Fly   172 LFEQHQGTH-----------ILQSLDGFALAVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYI 225
            :     ||.           :.|::|||.|.::.:|...|:||.|..|||:::::..|..|::|.
  Fly   246 V-----GTEDWLNGAEARELLKQTMDGFLLVLSHEGDITYVSENVVEYLGITKIDTLGQQIWEYS 305

  Fly   226 HQADHSEIADQLGLSLTSGGGGGGGSSSSGGGGGGAGGGMASPTSGASDDGSGTHGTNNPDVAAS 290
            ||.||:||.:.|.|...                      :|..........||            
  Fly   306 HQCDHAEIKEALSLKRE----------------------LAQKVKDEPQQNSG------------ 336

  Fly   291 MTQASTSGYKGYDRSFCVRMKSTLTKRG--CHFKSSGYRASDATSNCNNGNNASNNAKNVKNPGS 353
               .||     :.|...||:|.|||.||  .:.||:.|:....|      .:...|||..:    
  Fly   337 ---VST-----HHRDLFVRLKCTLTSRGRSINIKSASYKVIHIT------GHLVVNAKGER---- 383

  Fly   354 NYSVVLLLCKLRPQYTFSHSRKSQPPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHC 418
                 ||:...||                       :|.||..||.|....|:|:.:.|:|..:.
  Fly   384 -----LLMAIGRP-----------------------IPHPSNIEIPLGTSTFLTKHSLDMRFTYV 420

  Fly   419 EPRVSDLLDYSPEDLVNKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTC 483
            :.::.|||.|||:||::.||:|..|..|:.||..:...::.|||..|..||.:.|.|||.|:.:.
  Fly   421 DDKMHDLLGYSPKDLLDTSLFSCQHGADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQ 485

  Fly   484 ATVVCSTKNADEQNIICVNYVISNRENENMILDCC-QLEPSPDSIKHEEGLGNDKSSGSPGGDAS 547
            ||:|..  ....|:::||||||||.||::.|.... |...|....:|.:....:|   .|...|.
  Fly   486 ATIVYD--KLKPQSVVCVNYVISNLENKHEIYSLAQQTAASEQKEQHHQAAETEK---EPEKAAD 545

  Fly   548 GEGNSHLSAGDMK--LNSPKTDSEGHSHRGRGRSAAASHGSSMNSLTMIKDSPTPLGVEIDSGVL 610
            .|    :.|.:.|  :|:|                  .|.|.:.:        .||.:|.:... 
  Fly   546 PE----IIAQETKETVNTP------------------IHTSELQA--------KPLQLESEKAE- 579

  Fly   611 PTTVATPVPAATPPVQSTKRKRKTKASQHAEDQGQEQVISEQPLPKLPTMEQRDQQPRSRLPSIV 675
            .|...|...|..|||.:|....:.|  |..|....:|::..:.|.|   .|.....||:     :
  Fly   580 KTIEETKTIATIPPVTATSTADQIK--QLPESNPYKQILQAELLIK---RENHSPGPRT-----I 634

  Fly   676 DEQPSSAADSAVKDLEQAMSKHLPSPAAVVSVAPPNTDFSADSLLKQQQQQQQLDPNEKSSTIQW 740
            ..|..|.:.|.::..|:       .|.:|.:           |:|:                   
  Fly   635 TAQLLSGSSSGLRPEEK-------RPKSVTA-----------SVLR------------------- 662

  Fly   741 IGTPYQQPPAPMPATALLRQLYANRESVIRATARQTPTGVGPGVFYGDQQTGPLPTPPGSESSYE 805
               |...||...|.||:|              .::||.||.|.:       .|..|...:..|..
  Fly   663 ---PSPAPPLTPPPTAVL--------------CKKTPLGVEPNL-------PPTTTATAAIISSS 703

  Fly   806 NQYLQLHSAASGGHPGGQKTSAD---AFTNLVSTYG-------GYHSSIDYHNA---------MT 851
            ||.||:.......:|  |:.:.|   .|.:|.:..|       .....:.:|.|         ||
  Fly   704 NQQLQIAQQTQLQNP--QQPAQDMSKGFCSLFADDGRGLTMLKEEPDDLSHHLASTNCIQLDEMT 766

  Fly   852 PPSS---------VSPRDSNQPGKAAPVLASNGGYDYAPDPLRGQYATSSGDVVPATLPLKPQAS 907
            |.|.         :.|.|.|..........::|.:..:|                         |
  Fly   767 PFSDMLVGLMGTCLLPEDINSLDSTTCSTTASGQHYQSP-------------------------S 806

  Fly   908 YTATMHPSGSTTTEGGVTYSNLDQPQYFAPHSSFHLYHKGSPASGWYSTPSXVVDDQGQVPPSCQ 972
            .::|..||.::::..  :|:|                   ||.|.  .||:.......   ||.|
  Fly   807 SSSTSAPSNTSSSNN--SYAN-------------------SPLSP--LTPNSTATASN---PSHQ 845

  Fly   973 DQYHHHH----------HHHHHQDGSAGSS 992
            .|..||:          ||..|.|.|..||
  Fly   846 QQQQHHNQQQQQQQQQQHHPQHHDNSNSSS 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trhNP_001261207.1 HLH 85..137 CDD:238036 30/51 (59%)
PAS 176..236 CDD:214512 24/70 (34%)
PAS 180..>236 CDD:279347 22/66 (33%)
PAS 403..505 CDD:238075 38/101 (38%)
PAS_3 415..502 CDD:285623 31/86 (36%)
simaNP_001287599.1 HLH 156..209 CDD:238036 30/52 (58%)
PAS 256..392 CDD:279347 49/215 (23%)
PAS 265..>317 CDD:238075 21/51 (41%)
PAS 404..505 CDD:238075 38/102 (37%)
PAS_3 417..502 CDD:285623 31/86 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466435
Domainoid 1 1.000 51 1.000 Domainoid score I7753
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D393498at33208
OrthoFinder 1 1.000 - - FOG0000232
OrthoInspector 1 1.000 - - otm14250
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23043
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.950

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