DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1233 and Prdm5

DIOPT Version :9

Sequence 1:NP_612034.1 Gene:CG1233 / 38063 FlyBaseID:FBgn0035137 Length:1129 Species:Drosophila melanogaster
Sequence 2:XP_006506667.1 Gene:Prdm5 / 70779 MGIID:1918029 Length:630 Species:Mus musculus


Alignment Length:312 Identity:91/312 - (29%)
Similarity:134/312 - (42%) Gaps:68/312 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   796 CLVEGCMFRFKSPVTLEYH-GRCHNG----------------SLSSNQP-------VVCPECKSS 836
            |..:.|..|.||...|..| ...|.|                |:||.|.       ..|.|| ..
Mouse   264 CKADSCGKRLKSKDALRRHQENVHTGDPKRKLICSVCNRKCTSVSSLQEHRKIHEIFDCQEC-MK 327

  Fly   837 NFSNWNCLHTHLWRTHQIDMELYSCQLC--SFKTPIYSRL--VNTHAKIHSEERNYKCEQCGKGF 897
            .|.:.|.|..|: .||. :...|:|::|  |||     ||  |..|..||||::.|:|:.|||||
Mouse   328 KFISANQLKRHM-ITHS-EKRPYNCEICNKSFK-----RLDQVGAHKVIHSEDKPYQCKLCGKGF 385

  Fly   898 KNTKQLKNHRRLHRTQGLGMGKQSNEQISVGPEGNPVVMHRCEDCGAAFKQKKTLREHLCKERNE 962
            .:....|||::.|                  .|..|   .:|:.|.|.|:...:|:.||....:|
Mouse   386 AHRNVYKNHKKTH------------------SEERP---FQCDACKALFRTPFSLQRHLLIHNSE 429

  Fly   963 Q-LECPECQRRFGSKSSLRLHLR-SHQEHKRFRCDTCDHETSDHNAYRRHLATHKESKRYSCPHC 1025
            : .:|..|...|..|.:|.:|:: .|:.||::||:.|:......:..|.|..||...|...||:|
Mouse   430 RTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKVCPYC 494

  Fly  1026 DFRAIQSTAFRIHLQTRHPEQELSTIIYKCNQC--NFTSINQGLLQVHQAKH 1075
            ..:...|...|:|:::...|:.     |:|..|  .| |.|.| |::|...|
Mouse   495 GQKFASSGTLRVHIRSHTGERP-----YQCPYCEKGF-SKNDG-LKMHIRTH 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1233NP_612034.1 C2H2 Zn finger 830..852 CDD:275368 7/21 (33%)
C2H2 Zn finger 861..882 CDD:275368 9/24 (38%)
zf-H2C2_2 875..899 CDD:290200 13/23 (57%)
zf-C2H2 888..910 CDD:278523 10/21 (48%)
C2H2 Zn finger 890..910 CDD:275368 9/19 (47%)
zf-C2H2_2 893..999 CDD:289522 31/107 (29%)
C2H2 Zn finger 939..956 CDD:275368 5/16 (31%)
RPB9 966..1061 CDD:224510 27/97 (28%)
C2H2 Zn finger 966..986 CDD:275368 6/20 (30%)
C2H2 Zn finger 994..1014 CDD:275368 4/19 (21%)
C2H2 Zn finger 1022..1042 CDD:275368 6/19 (32%)
C2H2 Zn finger 1055..1075 CDD:275368 8/21 (38%)
Prdm5XP_006506667.1 PR-SET_PRDM5 2..128 CDD:380967
C2H2 Zn finger 169..190 CDD:275368
zf-C2H2_8 <172..222 CDD:374215
C2H2 Zn finger 201..217 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
COG5048 258..621 CDD:227381 91/312 (29%)
C2H2 Zn finger 264..287 CDD:275368 7/22 (32%)
C2H2 Zn finger 297..317 CDD:275368 4/19 (21%)
C2H2 Zn finger 322..342 CDD:275368 7/21 (33%)
C2H2 Zn finger 350..370 CDD:275368 9/24 (38%)
C2H2 Zn finger 378..398 CDD:275368 9/19 (47%)
C2H2 Zn finger 406..426 CDD:275368 7/19 (37%)
C2H2 Zn finger 434..455 CDD:275368 6/20 (30%)
C2H2 Zn finger 463..483 CDD:275368 4/19 (21%)
C2H2 Zn finger 491..511 CDD:275368 6/19 (32%)
C2H2 Zn finger 519..539 CDD:275368 8/21 (38%)
C2H2 Zn finger 547..567 CDD:275368
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 604..625 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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