DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1233 and row

DIOPT Version :10

Sequence 1:NP_612034.1 Gene:CG1233 / 38063 FlyBaseID:FBgn0035137 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_001260992.1 Gene:row / 36685 FlyBaseID:FBgn0033998 Length:1301 Species:Drosophila melanogaster


Alignment Length:664 Identity:129/664 - (19%)
Similarity:207/664 - (31%) Gaps:240/664 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   525 PITTKQKIFIKNVDILKAPQRGTLHL-------RTVDELNLM--------------------NRT 562
            |||...:.:.|....:..|....:|.       .|||::.|.                    |..
  Fly   436 PITDGDRNYKKRFQAILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA 500

  Fly   563 EVEHL--IVPNLEPMAMTMMELPPVQQQPME---------------------VTSQLKGPT-ETL 603
            .:|:|  |||.:....::::....:||...|                     :..|.:..| ||:
  Fly   501 VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNIIIHIAEQTRVTTNETI 565

  Fly   604 GEFQPSISESWPSEDGYDLPEDLECWPWMEDAVPEAGLVLPTPSEVANAPPLDGLSH--NAVDLL 666
            .:....::.: |.:|...||.:.:                .||   |||.| ..|..  |..|.:
  Fly   566 TQRLYQVATN-PFKDWSILPANYK----------------ETP---ANAAP-KRLKKPINDADYV 609

  Fly   667 VKDFSHLYAAPPEDTQNAEEGTAAG----GRGTVPPLVPVTSSEG--------------TASVAQ 713
            |   |:......:|...|..|...|    ..||.||.:|:....|              |.|.::
  Fly   610 V---SNKIPKKEKDRDIASSGVKRGRPPNALGTPPPQLPIKKGPGRPPGSTNQTKGDRATTSSSK 671

  Fly   714 SAA-------LGSLP------VPPLVPLAAEMNAAIEKPARIYVANNLLPAAVDPPLLGGGTSVR 765
            |.:       ||..|      :|.::....:....:|:   :|                      
  Fly   672 SLSKSLIAKGLGKKPKEKDEKIPMVIKKEEDDLRGLEE---LY---------------------- 711

  Fly   766 GRPYGAKHSGGAASKRKLSLGPNQVPEGGKCLVEGCMFRFKSPVTLEYHGRCHNGSLSSNQPVVC 830
               ||            :|.|.::..|         :|.:.:|.|:      ||   ...:.|.|
  Fly   712 ---YG------------ISDGTDEYHE---------IFPYSTPRTV------HN---ELAKTVEC 743

  Fly   831 PEC-KSSNFSNWNCLHTHL-------WRTHQIDMELYSCQLCSFKTPIYSRLVNTHAKIHSEER- 886
            |.| ...:|.:...|.|||       .:.||     :.|..|..|.|..|.|...:..:|..|. 
  Fly   744 PICLNGDSFDSNEKLQTHLVSHISPEGKQHQ-----FQCLFCLEKHPTESVLAKHNQIMHPTETK 803

  Fly   887 -----NYKCEQCGKGFKNTKQLKNH-RRLHRTQGLGMGKQSNEQISVGPEGNPVVMHRCEDCGAA 945
                 :|.|..|.:...:...|..| :::|.|..|                    .:.|..||..
  Fly   804 TEGSPSYYCLICQQRHNSLHLLTAHLQKVHSTLEL--------------------PYWCHSCGYR 848

  Fly   946 FKQKKTLREHLCKERNEQ--LECPECQ-----RRFGSKSSLR-----LHLRSH--QEHKRFRCDT 996
            ....:.|..|...:...|  |:||.|.     .:.|..:.||     :||..|  :.....||..
  Fly   849 SSSHRDLVRHFYDDHKHQNFLQCPYCLDIFYFSKLGVVNQLRIEHYFMHLDEHINKRDPSLRCQK 913

  Fly   997 CDHETSDHNAYRRHLATHKESKRYSCPHCDFRAIQSTAFRI---HLQTRHPEQ-ELSTIIYK--- 1054
            |.....:....::|...|..|...:  :...|.:.:.:..|   .::|.|.|| ..||  ||   
  Fly   914 CSLSFLEKGDLKQHAVQHHVSMTKT--NRPVRLLLNNSMLIPPPKIRTHHREQPPFST--YKRPV 974

  Fly  1055 ---------CNQCN 1059
                     |.:||
  Fly   975 FFAFLEGKTCAECN 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1233NP_612034.1 COG5236 814..>1043 CDD:227561 54/260 (21%)
C2H2 Zn finger 830..852 CDD:275368 8/29 (28%)
C2H2 Zn finger 861..882 CDD:275368 6/20 (30%)
C2H2 Zn finger 890..910 CDD:275368 4/20 (20%)
C2H2 Zn finger 939..956 CDD:275368 4/16 (25%)
C2H2 Zn finger 966..986 CDD:275368 8/29 (28%)
C2H2 Zn finger 994..1014 CDD:275368 3/19 (16%)
C2H2 Zn finger 1022..1042 CDD:275368 2/22 (9%)
C2H2 Zn finger 1055..1075 CDD:275368 3/5 (60%)
rowNP_001260992.1 C2H2 Zn finger 777..798 CDD:275368 6/20 (30%)
C2H2 Zn finger 812..833 CDD:275368 4/20 (20%)
C2H2 Zn finger 842..858 CDD:275368 4/15 (27%)

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