DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1233 and Lime

DIOPT Version :10

Sequence 1:NP_612034.1 Gene:CG1233 / 38063 FlyBaseID:FBgn0035137 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster


Alignment Length:617 Identity:104/617 - (16%)
Similarity:157/617 - (25%) Gaps:298/617 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 EPEKPRQP-KIYIRNVDILKEPMVLPSALPGLGFNST----MPSAAEPGQSGLVVGGADGDVFQS 431
            :.|..|.| |:|         |.: |||:|...|:.|    ||...|      ::..::......
  Fly    25 QTEPKRHPAKMY---------PQI-PSAIPSPPFSPTDPTDMPLVKE------ILARSEHINVPE 73

  Fly   432 ETLLTPTCQLPGFEPSLAPLAQMCSEAF----PFDSVLNGNGAPAAHVENTRFSALDLDFGVDFV 492
            .|:|...|.|             |.:.|    .|...|..:.|......|||             
  Fly    74 GTVLCVPCYL-------------CKQPFNDIESFKEHLTQHAAEINAWNNTR------------- 112

  Fly   493 SEEATPPPPLNDPLTMMEPQPVQLEHYMPPTAPITTKQKIFIKNVDILKAPQRGTLHLRTVDELN 557
            ::|.||||.:. |......:|     ::.|     |.|.:| .::|..........|.|      
  Fly   113 AQEQTPPPTIT-PFVQSMNKP-----FVHP-----TDQHLF-HSIDHGDMDHHHNAHYR------ 159

  Fly   558 LMNRTEV-----EHLIVPNLE---PMAMTMMELPPVQQQPMEVTSQLKGPTETLGEFQPSISESW 614
              ||.|.     .....|.||   |..|..:...|:|..||.:|:|                   
  Fly   160 --NRMEFGCPPPMDFYSPPLEPEIPFQMPAVHQHPIQIPPMYMTAQ------------------- 203

  Fly   615 PSEDGYDLPEDLECWPWMEDAVPEAGLVLPTPSEVANAPPLDGLSHNAVDLLVKDFSHLYAAPPE 679
                                             ..|..||:..|.|..::|..|           
  Fly   204 ---------------------------------HTAYEPPVQFLGHRPLELRQK----------- 224

  Fly   680 DTQNAEEGTAAGGRGTVPPLVPVTSSEGTASVAQSAALGSLPVPPLVPLAAEMNAAIEKPARIYV 744
                                                    ||:.|..||                
  Fly   225 ----------------------------------------LPMSPQSPL---------------- 233

  Fly   745 ANNLLPAAVDPPLLGGGTSVRGRPYGAKHSGGAASKRKLSLGPNQVPEGGKCLVEGCMFRFKSPV 809
                                  .|.|...:....|.:..||....:     |:.||.:.|.:.|.
  Fly   234 ----------------------EPSGHPMASAIPSNQHTSLEMQNL-----CVPEGILTRVEEPP 271

  Fly   810 TLEY-------------HGRCHNGSLSSNQPVVCPECKSSNFSNWNCLHTHLWRTHQIDMELYSC 861
            .||.             .|:..:..|...:|   |..||..|:                      
  Fly   272 VLENPRPQAQDPIQDAGAGKSRSAVLIEPKP---PNAKSLAFN---------------------- 311

  Fly   862 QLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNTKQLKNHR-RLHRTQGLGMGKQSNEQI 925
                                   :..::|..|||...:.:.||.|. ..|          .|:::
  Fly   312 -----------------------QGQFECNWCGKRLSSRQSLKYHESHFH----------GNKEL 343

  Fly   926 SVGP-EGNPVVMHRCEDCGAAFKQKKTLREHL 956
            :|.. |.|....|:|..|...:|::..|..|:
  Fly   344 AVNRLEKNLTKQHKCLTCKKRYKRRTFLLMHM 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1233NP_612034.1 COG5236 814..>1043 CDD:227561 25/145 (17%)
C2H2 Zn finger 830..852 CDD:275368 4/21 (19%)
C2H2 Zn finger 861..882 CDD:275368 0/20 (0%)
C2H2 Zn finger 890..910 CDD:275368 7/20 (35%)
C2H2 Zn finger 939..956 CDD:275368 4/16 (25%)
C2H2 Zn finger 966..986 CDD:275368
C2H2 Zn finger 994..1014 CDD:275368
C2H2 Zn finger 1022..1042 CDD:275368
C2H2 Zn finger 1055..1075 CDD:275368
LimeNP_610529.1 PAT1 <112..>239 CDD:401645 43/300 (14%)
C2H2 Zn finger 317..336 CDD:275368 7/18 (39%)
C2H2 Zn finger 358..377 CDD:275368 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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