DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1233 and Lime

DIOPT Version :9

Sequence 1:NP_612034.1 Gene:CG1233 / 38063 FlyBaseID:FBgn0035137 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_610529.1 Gene:Lime / 36023 FlyBaseID:FBgn0033458 Length:487 Species:Drosophila melanogaster


Alignment Length:617 Identity:104/617 - (16%)
Similarity:157/617 - (25%) Gaps:298/617 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 EPEKPRQP-KIYIRNVDILKEPMVLPSALPGLGFNST----MPSAAEPGQSGLVVGGADGDVFQS 431
            :.|..|.| |:|         |.: |||:|...|:.|    ||...|      ::..::......
  Fly    25 QTEPKRHPAKMY---------PQI-PSAIPSPPFSPTDPTDMPLVKE------ILARSEHINVPE 73

  Fly   432 ETLLTPTCQLPGFEPSLAPLAQMCSEAF----PFDSVLNGNGAPAAHVENTRFSALDLDFGVDFV 492
            .|:|...|.|             |.:.|    .|...|..:.|......|||             
  Fly    74 GTVLCVPCYL-------------CKQPFNDIESFKEHLTQHAAEINAWNNTR------------- 112

  Fly   493 SEEATPPPPLNDPLTMMEPQPVQLEHYMPPTAPITTKQKIFIKNVDILKAPQRGTLHLRTVDELN 557
            ::|.||||.:. |......:|     ::.|     |.|.:| .::|..........|.|      
  Fly   113 AQEQTPPPTIT-PFVQSMNKP-----FVHP-----TDQHLF-HSIDHGDMDHHHNAHYR------ 159

  Fly   558 LMNRTEV-----EHLIVPNLE---PMAMTMMELPPVQQQPMEVTSQLKGPTETLGEFQPSISESW 614
              ||.|.     .....|.||   |..|..:...|:|..||.:|:|                   
  Fly   160 --NRMEFGCPPPMDFYSPPLEPEIPFQMPAVHQHPIQIPPMYMTAQ------------------- 203

  Fly   615 PSEDGYDLPEDLECWPWMEDAVPEAGLVLPTPSEVANAPPLDGLSHNAVDLLVKDFSHLYAAPPE 679
                                             ..|..||:..|.|..::|..|           
  Fly   204 ---------------------------------HTAYEPPVQFLGHRPLELRQK----------- 224

  Fly   680 DTQNAEEGTAAGGRGTVPPLVPVTSSEGTASVAQSAALGSLPVPPLVPLAAEMNAAIEKPARIYV 744
                                                    ||:.|..||                
  Fly   225 ----------------------------------------LPMSPQSPL---------------- 233

  Fly   745 ANNLLPAAVDPPLLGGGTSVRGRPYGAKHSGGAASKRKLSLGPNQVPEGGKCLVEGCMFRFKSPV 809
                                  .|.|...:....|.:..||....:     |:.||.:.|.:.|.
  Fly   234 ----------------------EPSGHPMASAIPSNQHTSLEMQNL-----CVPEGILTRVEEPP 271

  Fly   810 TLEY-------------HGRCHNGSLSSNQPVVCPECKSSNFSNWNCLHTHLWRTHQIDMELYSC 861
            .||.             .|:..:..|...:|   |..||..|:                      
  Fly   272 VLENPRPQAQDPIQDAGAGKSRSAVLIEPKP---PNAKSLAFN---------------------- 311

  Fly   862 QLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNTKQLKNHR-RLHRTQGLGMGKQSNEQI 925
                                   :..::|..|||...:.:.||.|. ..|          .|:::
  Fly   312 -----------------------QGQFECNWCGKRLSSRQSLKYHESHFH----------GNKEL 343

  Fly   926 SVGP-EGNPVVMHRCEDCGAAFKQKKTLREHL 956
            :|.. |.|....|:|..|...:|::..|..|:
  Fly   344 AVNRLEKNLTKQHKCLTCKKRYKRRTFLLMHM 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1233NP_612034.1 C2H2 Zn finger 830..852 CDD:275368 4/21 (19%)
C2H2 Zn finger 861..882 CDD:275368 0/20 (0%)
zf-H2C2_2 875..899 CDD:290200 4/23 (17%)
zf-C2H2 888..910 CDD:278523 7/22 (32%)
C2H2 Zn finger 890..910 CDD:275368 7/20 (35%)
zf-C2H2_2 893..999 CDD:289522 17/66 (26%)
C2H2 Zn finger 939..956 CDD:275368 4/16 (25%)
RPB9 966..1061 CDD:224510
C2H2 Zn finger 966..986 CDD:275368
C2H2 Zn finger 994..1014 CDD:275368
C2H2 Zn finger 1022..1042 CDD:275368
C2H2 Zn finger 1055..1075 CDD:275368
LimeNP_610529.1 C2H2 Zn finger 317..336 CDD:275368 7/18 (39%)
C2H2 Zn finger 358..377 CDD:275368 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24408
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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