DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1233 and PRDM5

DIOPT Version :9

Sequence 1:NP_612034.1 Gene:CG1233 / 38063 FlyBaseID:FBgn0035137 Length:1129 Species:Drosophila melanogaster
Sequence 2:NP_001366033.1 Gene:PRDM5 / 11107 HGNCID:9349 Length:641 Species:Homo sapiens


Alignment Length:323 Identity:94/323 - (29%)
Similarity:138/323 - (42%) Gaps:79/323 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   796 CLVEGCMFRFKSPVTLEYH-GRCHNG-------------------SLSSNQPV----VCPECKSS 836
            |..:.|..|.||...|:.| ...|.|                   ||..::.:    .|.|| ..
Human   264 CKADSCGKRLKSKDALKRHQENVHTGDPKKKLICSVCNKKCSSASSLQEHRKIHEIFDCQEC-MK 327

  Fly   837 NFSNWNCLHTHLWRTHQIDMEL-----------YSCQLC--SFKTPIYSRL--VNTHAKIHSEER 886
            .|.:.|.|..|: .||. ||.|           |:|::|  |||     ||  |..|..||||::
Human   328 KFISANQLKRHM-ITHS-DMRLSPLIFLIEKRPYNCEICNKSFK-----RLDQVGAHKVIHSEDK 385

  Fly   887 NYKCEQCGKGFKNTKQLKNHRRLHRTQGLGMGKQSNEQISVGPEGNPVVMHRCEDCGAAFKQKKT 951
            .|||:.|||||.:....|||::.|                  .|..|   .:||:|.|.|:...:
Human   386 PYKCKLCGKGFAHRNVYKNHKKTH------------------SEERP---FQCEECKALFRTPFS 429

  Fly   952 LREHLCKERNEQ-LECPECQRRFGSKSSLRLHLR-SHQEHKRFRCDTCDHETSDHNAYRRHLATH 1014
            |:.||....:|: .:|..|...|..|.:|.:|:: .|:.||::||:.|:......:..|.|..||
Human   430 LQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTH 494

  Fly  1015 KESKRYSCPHCDFRAIQSTAFRIHLQTRHPEQELSTIIYKCNQC--NFTSINQGLLQVHQAKH 1075
            ...|...||:|..:...|...|:|:::...|:.     |:|..|  .| |.|.| |::|...|
Human   495 TGEKEKICPYCGQKFASSGTLRVHIRSHTGERP-----YQCPYCEKGF-SKNDG-LKMHIRTH 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1233NP_612034.1 C2H2 Zn finger 830..852 CDD:275368 7/21 (33%)
C2H2 Zn finger 861..882 CDD:275368 9/24 (38%)
zf-H2C2_2 875..899 CDD:290200 14/23 (61%)
zf-C2H2 888..910 CDD:278523 11/21 (52%)
C2H2 Zn finger 890..910 CDD:275368 9/19 (47%)
zf-C2H2_2 893..999 CDD:289522 32/107 (30%)
C2H2 Zn finger 939..956 CDD:275368 6/16 (38%)
RPB9 966..1061 CDD:224510 27/97 (28%)
C2H2 Zn finger 966..986 CDD:275368 6/20 (30%)
C2H2 Zn finger 994..1014 CDD:275368 4/19 (21%)
C2H2 Zn finger 1022..1042 CDD:275368 6/19 (32%)
C2H2 Zn finger 1055..1075 CDD:275368 8/21 (38%)
PRDM5NP_001366033.1 PR-SET_PRDM5 2..128 CDD:380967
COG5048 <145..338 CDD:227381 17/74 (23%)
C2H2 Zn finger 169..190 CDD:275368
C2H2 Zn finger 201..221 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
COG5048 262..631 CDD:227381 94/323 (29%)
C2H2 Zn finger 264..287 CDD:275368 7/22 (32%)
C2H2 Zn finger 297..317 CDD:275368 2/19 (11%)
C2H2 Zn finger 322..342 CDD:275368 7/21 (33%)
C2H2 Zn finger 361..381 CDD:275368 9/24 (38%)
C2H2 Zn finger 389..409 CDD:275368 9/19 (47%)
C2H2 Zn finger 417..437 CDD:275368 8/19 (42%)
C2H2 Zn finger 445..462 CDD:275368 5/16 (31%)
C2H2 Zn finger 474..494 CDD:275368 4/19 (21%)
C2H2 Zn finger 502..522 CDD:275368 6/19 (32%)
C2H2 Zn finger 530..550 CDD:275368 8/21 (38%)
C2H2 Zn finger 558..578 CDD:275368
C2H2 Zn finger 586..606 CDD:275368
C2H2 Zn finger 615..636 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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