DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc5 and Myb

DIOPT Version :9

Sequence 1:NP_001163313.1 Gene:Cdc5 / 38062 FlyBaseID:FBgn0265574 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_511170.1 Gene:Myb / 32543 FlyBaseID:FBgn0002914 Length:657 Species:Drosophila melanogaster


Alignment Length:673 Identity:135/673 - (20%)
Similarity:228/673 - (33%) Gaps:213/673 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEDEKLL 72
            |..|..:||.:||..|..:|:| |..|......:..:|.:.||.:.|:|.:.|..|:|:||:.::
  Fly    85 GKRWSKSEDVLLKQLVETHGEN-WEIIGPHFKDRLEQQVQQRWAKVLNPELIKGPWTRDEDDMVI 148

  Fly    73 HLAK-LMPTQWRTIAPII-GRTAAQCLERYEYLLDQAQRKEDGEDTMDDPRKLKPGEIDPNPETK 135
            .|.: ..|.:|..||..: ||...||.||:...|                          ||..|
  Fly   149 KLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHL--------------------------NPNIK 187

  Fly   136 PARPDPKDMDEDELEMLSEARARLANTQGKKAKR------KAREKQLEEARRLATLQKRRELRAA 194
            ...     ..|.|.|::.:|...|.|...|.|||      .|.:.......|.....:||.:.|:
  Fly   188 KTA-----WTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNAS 247

  Fly   195 G-------------IGSGN-RKRIKGIDYNAEIPFEKRPAHGFYDTSEEHLQKNEPDFNKMRQQD 245
            |             |.||. .|.:..:.:|.|             :..|.:.|:|         :
  Fly   248 GSDLKSSRTHLITLIKSGGISKCMNNMQHNKE-------------SGGEAVNKSE---------N 290

  Fly   246 LDGELRSEKEERERKRDKQKLKQRKENEVPTAMLQNMEPERKRSKLVLP--TPQISDMELQQVVK 308
            .||...:..:..:..::.|...|:..|....:| |::      .||.:|  ||.|          
  Fly   291 ADGASVTAVKGGDLAQESQDDHQKGSNLAHLSM-QHL------IKLTMPRQTPII---------- 338

  Fly   309 LGRASEMAKEIAGESGIETTDALLADYSITPQVAATPRTPAPYTDRIMQEAQNMMALTHTETPLK 373
            |.|..:...|...::|..:::....:     :.|...|:..|.:..|                  
  Fly   339 LKRTRKHIPETHHQAGCSSSETFNQE-----EAAGNARSRPPSSPVI------------------ 380

  Fly   374 GGLNTPLHESDFSGVLPKAASIATPNTVIATPFRTQREGGAATPGGFQTPSSGALVPVKGAGGAT 438
                :|:....||           |:..:.:|..|.          |:.....|..||       
  Fly   381 ----SPIKSLPFS-----------PSHFLKSPCLTT----------FEDMDLRASTPV------- 413

  Fly   439 GVVNTPAYVRDKLSINPEESMGVTETPAHYKNYQKQLKSTLRDGLSTLPAPRNDYEIVVPEQEES 503
                |..|.|..:.|..|......|||     ::.||      |..| |.|.......:.::.:.
  Fly   414 ----TKVYNRVGMEIKKEMETSSIETP-----HKSQL------GPRT-PTPFKKALAAIGKKRDG 462

  Fly   504 ERIETNSEPA-VEDQADVDARLLAEQEARRKRELEKRSQVIQRSLPRPTEVNTKILRPQSEKQNL 567
            .|.|.:|..: |||.|::    :.|:.             :..||   |..|:|::....:...|
  Fly   463 RRYEPSSPSSLVEDLAEI----IHEEH-------------LSNSL---TANNSKMMGAADQNSTL 507

  Fly   568 TEQQQAEELIKHEMITMQLYDSVKDPVPGQSQHKLEQLQSYFKAN-PY-----EDISQQELAKAK 626
            :.:..|:.                   |...:...:.|.|.:.:| ||     :.|...|.....
  Fly   508 STEYNAQS-------------------PPHMKRARKSLLSTWSSNHPYNAGSAKRIQPFETETPS 553

  Fly   627 QMLTEEMEVVKERM-AHGELPLD 648
            :.||...:::|:.: :..:||.|
  Fly   554 KFLTSPGDILKDTLCSEQDLPFD 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc5NP_001163313.1 SANT 8..56 CDD:197842 15/47 (32%)
Myb_DNA-bind_6 11..71 CDD:290632 20/59 (34%)
SANT_CDC5_II 56..108 CDD:212557 18/53 (34%)
SANT 60..104 CDD:197842 16/45 (36%)
Myb_Cef 397..648 CDD:288664 49/258 (19%)
MybNP_511170.1 SANT 85..132 CDD:197842 15/47 (32%)
Myb_DNA-bind_6 88..147 CDD:290632 20/59 (34%)
SANT 136..184 CDD:197842 17/73 (23%)
Myb_DNA-bind_6 139..197 CDD:290632 21/88 (24%)
SANT 188..235 CDD:197842 11/51 (22%)
Myb_DNA-binding 188..233 CDD:278669 11/49 (22%)
Cmyb_C 388..530 CDD:286408 41/224 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456660
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5147
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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