DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc5 and myb

DIOPT Version :9

Sequence 1:NP_001163313.1 Gene:Cdc5 / 38062 FlyBaseID:FBgn0265574 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001296751.1 Gene:myb / 30519 ZFINID:ZDB-GENE-991110-14 Length:641 Species:Danio rerio


Alignment Length:776 Identity:160/776 - (20%)
Similarity:258/776 - (33%) Gaps:239/776 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEDEKLLHLA 75
            |...|||.||..|..:|...|..|||.|..::..||:.||.:.|:|.:.|..|::|||::::.|.
Zfish    43 WTREEDEKLKRLVEHHGSEDWKVIASFLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELV 107

  Fly    76 -KLMPTQWRTIAP-IIGRTAAQCLERYEYLLDQAQRKEDGEDTMDDPRKLKPGEIDPNPETKPAR 138
             |..|.:|..||. :.||...||.||:...|                          |||.|.. 
Zfish   108 QKYGPKRWSVIAKHLKGRIGKQCRERWHNHL--------------------------NPEVKKT- 145

  Fly   139 PDPKDMDEDELEMLSEARARLANTQGKKAK-RKAREKQLEEARRLATLQKRRELRAAGIGSGNRK 202
                ...|:|.:::.:|..:|.|...:.|| ...|.....:....:|:  ||::...|.      
Zfish   146 ----SWTEEEDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTM--RRKVEQEGY------ 198

  Fly   203 RIKGIDYNAEIPFEKRPAHGFYDTSEEH-LQKNEPDFNKMRQQDLDGELRSEKEERERKRDKQKL 266
                :.:.|::  ...|.:..|  |:.| |..|....|                           
Zfish   199 ----LQHAAKV--SPTPLNNSY--SKPHLLNYNHTPSN--------------------------- 228

  Fly   267 KQRKENEVPTAMLQNMEPERKRSKLVLPTPQISDMELQQVVKLGRASEMAKEIAGESGIETTDAL 331
                 ..:|.:.:.|..|....|..| |.|....:.:....:.|                 |.|:
Zfish   229 -----TSMPASSMSNQYPYYTESSRV-PFPLALQLNILNFPQHG-----------------TAAI 270

  Fly   332 LADYSITPQVAATPRTPAPYTDRIMQEAQNMMALTHTETPLKGGLNTPLHESDFSGVLPKAASIA 396
            ...||          ...|..::.::|.:  |.|..||..|||....|:..:.:.|....:.:.:
Zfish   271 QRHYS----------DEDPEKEKRVKEIE--MLLMSTENELKGQQALPISMNGYGGWNRGSLADS 323

  Fly   397 TPNTVIATPFRTQREGGAATPGGFQTPSSGALVPVKGAGGATGVVNTPAYVRDKLSINPEESMGV 461
            :...|::.|..:..:|               .:|.:.|.|.|   |:|.  .|..|..||....:
Zfish   324 SVGIVVSVPAPSLEQG---------------CLPEESAHGNT---NSPN--NDSSSTLPEFIDAI 368

  Fly   462 TETPAHYKNYQKQLKSTLRDGLST------------------------LP-APRNDYEIVVPEQE 501
            ...|:.:.|  |..|:..:.|..:                        || :|...:...|....
Zfish   369 DSAPSVWAN--KHPKTECQTGQGSPANNGNRSAPTFLCSTPKYSSVRHLPFSPTQFFNASVSPDS 431

  Fly   502 ESERIETNSEPAVEDQA---DVDARLLAEQEARRKRELEKRSQVIQRSLPRPTEVNTKILRPQSE 563
            :|:.|.....|....:|   |:..|...|.|..|...|  |..:::.|...||...:        
Zfish   432 DSQNIPVTPSPVCSQKALQQDLALRPQKENELFRTPNL--RRSIMECSPRTPTPFKS-------- 486

  Fly   564 KQNLTEQQQAEELIKHEMITMQLYDSVKDPVPGQSQHKLEQ-LQSYFKANPYE--------DISQ 619
                               |:.:.||...|:.......|:. :....|..|.|        .:.|
Zfish   487 -------------------TLTMQDSKYGPLKRVHSPSLDSGVVGTIKQEPQECEISVGGVHLDQ 532

  Fly   620 QELAKAKQMLTEEMEVV----KERMAHGEL-PLDVYAQVWQECL-GQVLYLPSQHRYTRANLASK 678
            ..|.|.||    |:|.|    :.:..|.:| |.:..|....:.| ..||.||:            
Zfish   533 PPLKKIKQ----EVESVCLQWEGQDLHTQLFPSNGPAHDMPDLLTSSVLMLPN------------ 581

  Fly   679 KDRLESAEKRLETNRRHMAK--------EAKRCGKIEKKL-------KILTGGYQARAQVL 724
            .::.|...|..:..||.:..        |...|||.|::.       |.|: .|.:||.|:
Zfish   582 TEKTEDGHKAAQLPRRPIGSPLQQLNTWEQVLCGKTEEQTIPSEATHKYLS-NYSSRALVI 641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc5NP_001163313.1 SANT 8..56 CDD:197842 18/44 (41%)
Myb_DNA-bind_6 11..71 CDD:290632 24/59 (41%)
SANT_CDC5_II 56..108 CDD:212557 19/53 (36%)
SANT 60..104 CDD:197842 17/45 (38%)
Myb_Cef 397..648 CDD:288664 55/292 (19%)
mybNP_001296751.1 SANT 40..88 CDD:197842 18/44 (41%)
Myb_DNA-binding 40..86 CDD:278669 17/42 (40%)
SANT 92..140 CDD:197842 18/73 (25%)
Myb_DNA-binding 92..138 CDD:278669 17/45 (38%)
SANT 144..191 CDD:197842 9/53 (17%)
Myb_DNA-binding 144..189 CDD:278669 8/49 (16%)
LMSTEN 259..303 CDD:285262 14/72 (19%)
Cmyb_C 417..560 CDD:286408 34/175 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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