DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc5 and ttf1.2

DIOPT Version :9

Sequence 1:NP_001163313.1 Gene:Cdc5 / 38062 FlyBaseID:FBgn0265574 Length:814 Species:Drosophila melanogaster
Sequence 2:NP_001353684.1 Gene:ttf1.2 / 100334190 ZFINID:ZDB-GENE-100921-87 Length:567 Species:Danio rerio


Alignment Length:626 Identity:109/626 - (17%)
Similarity:201/626 - (32%) Gaps:273/626 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 EHLQKNEP---DFNKMRQQDL-----DGELRSEKEERERKRDKQKLKQRKEN--EVPTAMLQNME 283
            :.:|.:.|   |..||:::.:     ..||....:|:..||.|:|.|:|:::  |....:..:..
Zfish     2 DEMQSDSPNNVDGEKMKKKKISKTTEQHELTESPQEQTEKRRKKKKKKRRDSTTECDDDLQTDTG 66

  Fly   284 PERKRSKLVLPTPQISDMELQQVVKLGRASE----MAKEIAGESGIETTDALLADYSITPQVAAT 344
            .::||.||        |.|.:..|.....|:    ..:|:.|.|..:|:..|.|      :|:||
Zfish    67 KKKKRRKL--------DNEGETSVMDDGVSDQHEAQTQELPGSSEEKTSRRLKA------RVSAT 117

  Fly   345 PRTPAPYTDRIMQEAQNMMALTHTETPLKGGLNTPLHESDFSGVLPKAASIATPNTVIATPFRTQ 409
            ..:.|..|    :|.|......|.|.|     ||  .:.:.||         .|:.||.|.:|..
Zfish   118 QTSHAEMT----EEEQTDTETEHEEEP-----NT--SDDEESG---------PPDVVIGTGWRKS 162

  Fly   410 REGGAATPGGFQTPSSGALVPVKGAGGATGVVNTPAYVRDKLSINPEESMGVTETPAHYKNYQKQ 474
            |:                 :||                                           
Zfish   163 RK-----------------IPV------------------------------------------- 167

  Fly   475 LKSTLRDGLSTLPAPRNDYEIVVPEQEESERIETNSEPAVEDQADVDARLLAEQEARRKRELEKR 539
                             |.:::      :|..|.....|:|.|:|.:...:.:.:..|.||.:|:
Zfish   168 -----------------DLKLL------AELKEFCPNTAIESQSDTEINKMIKYDLPRFREFKKQ 209

  Fly   540 SQVIQRSLPRPTEVNTKILRPQSEK--QNLTEQQQAEELIKHEMITMQLYDSVKDPVPGQSQHKL 602
            ...::..         :..:.::||  ||:::.          :...||.|:|.           
Zfish   210 GIAMRHG---------RFSKAENEKLRQNVSDL----------LALTQLKDAVM----------- 244

  Fly   603 EQLQSYFKANPYEDISQQELAKAKQMLTEEMEVVK--------ERMAHGELPL---DVYAQVWQE 656
                               |...|:.|.|||::.:        :::|.| :|.   |||.:    
Zfish   245 -------------------LFHPKRFLNEEMKLAELKRMYGFYQKIAEG-IPRPCHDVYTR---- 285

  Fly   657 CLGQVLYLPSQHRYTRANLASKKDRL--------------------------------------- 682
              |:.::   .||:.:.|...::|:.                                       
Zfish   286 --GKKMF---DHRHYKGNFTEEEDKRLLKYYNLYGPNWKKISEKTGRSSFSLRKRFPQISSVKRK 345

  Fly   683 -----ESAEKRLETNRRHMAKEAKRCGKIEKKLKILTGGYQARAQVLIKQLQDT----------Y 732
                 |..::.|...|.|:....|.....:||.|      :.|.::|.:.|..|          |
Zfish   346 GPWTPEEVQRLLRAVREHVLSVLKSANPNKKKPK------RVRREILYENLPWTTIADKVETRCY 404

  Fly   733 GQIEQNSVSL--------STFRFLGEQEAIAVPRRLESLQE 765
            .|..:..:|:        :|||  |:...:|..|.::::.|
Zfish   405 RQCREKWMSILFTRMSSGTTFR--GKAGLLAKIRLIKAMYE 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc5NP_001163313.1 SANT 8..56 CDD:197842
Myb_DNA-bind_6 11..71 CDD:290632
SANT_CDC5_II 56..108 CDD:212557
SANT 60..104 CDD:197842
Myb_Cef 397..648 CDD:288664 36/263 (14%)
ttf1.2NP_001353684.1 Myb_DNA-bind_6 299..356 CDD:316443 2/56 (4%)
Myb_DNA-binding 345..415 CDD:306708 15/75 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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