DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and Gopc

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001186201.1 Gene:Gopc / 94221 MGIID:2149946 Length:463 Species:Mus musculus


Alignment Length:569 Identity:112/569 - (19%)
Similarity:183/569 - (32%) Gaps:223/569 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 PGDV--VRWVDA-QKQFKKQCSSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNI 144
            ||.|  .||::. :|:|.|....|.|....:            ||.  |.:.| |:         
Mouse    26 PGGVSMFRWLEVLEKEFDKAFVDVDLLLGEI------------DPD--QADIT-YE--------- 66

  Fly   145 LLGKLPCSSNTQCLLASYTVQSELGDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLH---- 205
              |:...:|.:.|             |..|.|:...:|.:.                |||.    
Mouse    67 --GRQKMTSLSSC-------------FAQLCHKAQTVSQIN----------------HKLEAQLV 100

  Fly   206 --RGQL-PADAEYNYLE---HAKRLELYG--IDLHRAT----DSNGKELQLGVSAVGLLVFQHSL 258
              |.:| ...||...||   |.:.|:|:.  :.||..|    ||...:.:|.|.:|..|  :..|
Mouse   101 DLRSELTETQAEKVVLEKEVHEQLLQLHSTQLQLHAKTGQSVDSGAIKAKLSVHSVEDL--EREL 163

  Fly   259 RVNTFSWSKMVKVSFKRKDFFIQLRREPSENYDTLLGFGMSSHKHAKALWKSCVEHHSFFRLKRP 323
            ..|     |..||...|.:..::|.|:.:|          :..:|...|                
Mouse   164 EAN-----KTEKVKEARLEAEVKLLRKENE----------ALRRHIAVL---------------- 197

  Fly   324 HRLSRFLNISLGSKFYYSGRTELQAVQESKQRGRIHKVFVRSPSKRLLGAAGGVGTSGSSGGTPM 388
              .:......|.:|:.           :.:..||:.::       :|||                
Mouse   198 --QAEVYGARLAAKYL-----------DKELAGRVQQI-------QLLG---------------- 226

  Fly   389 QQHSGSESANSHNNGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDVGF 453
            :...|           ||              ||             |.|.|...|..:......
Mouse   227 RDMKG-----------PA--------------HD-------------KLWNQLEAEIHLHRHKTV 253

  Fly   454 IEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQP--ESGSDLITIR----LQADEQ 512
            |..|..|.:...|...||                    ||.|.  :....:..||    |:.|.:
Mouse   254 IRACRGRNDLKRPMQAPP--------------------GHDQDSLKKSQGVGPIRKVLLLKEDHE 298

  Fly   513 GRYGFNVKGGVDLSLPVQVSKVVPHTPADRCTPRVCEGDEVLMINGRDVHGLRHEQVVAMIRDCR 577
            | .|.::.||.:..:|:.:|::.|..||||| ..:..||.:|.:||.::...:|::.|.::...|
Mouse   299 G-LGISITGGKEHGVPILISEIHPGQPADRC-GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 361

  Fly   578 HQASGELLLTVRPQRSAPLLLEEEPLYQYVPES--------DEIGSHSN 618
            .:...|::..      ||.:..::...:|..||        ||:....|
Mouse   362 GEIEFEVVYV------APEVDSDDENVEYEDESGHRYRLYLDELEGSGN 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 34/163 (21%)
FERM_N 38..102 CDD:286467 8/21 (38%)
FERM_M 125..232 CDD:278785 22/118 (19%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 21/99 (21%)
FA 333..369 CDD:285894 4/35 (11%)
PDZ_signaling 502..589 CDD:238492 25/90 (28%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
GopcNP_001186201.1 PDZ_signaling 287..369 CDD:238492 25/83 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.