DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptpmeg and Ush1c

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_710143.2 Gene:Ush1c / 72088 MGIID:1919338 Length:910 Species:Mus musculus


Alignment Length:436 Identity:86/436 - (19%)
Similarity:147/436 - (33%) Gaps:168/436 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 HSPILLPTTIADAV------GHQ------QPESGSDLITIRLQADEQGRYGFNVKGGVDLSLPVQ 530
            :.|..||  :.||:      .||      .|.....|..:||........|.:|:||::....:.
Mouse    51 NEPNRLP--LFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLF 113

  Fly   531 VSKVVPHTPADRCTPRVCEGDEVLMINGRDVHGLRHEQVVAMIR-------DCRHQASGELLLTV 588
            :|.::....||....:|  |||::.|||..:....||:|:.:||       ..||       :.:
Mouse   114 ISHLIKGGQADSVGLQV--GDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRH-------IGL 169

  Fly   589 RPQRSAPLLLEEEPLYQYVPE--SDE------IGSHSNLLDGDALFTQSLL---LLSDGLASGAL 642
            .|.:|:|   ||...:|||.:  |:.      :||..|....:.....||:   .|...::||.:
Mouse   170 IPVKSSP---EESLKWQYVDQFVSESGGVRGGLGSPGNRTTKEKKVFISLVGSRGLGCSISSGPI 231

  Fly   643 LAQYELMYRKNPDLAITEARKPANAPKNRYRDISPYDCTRVSLVNSLTGDYINANYVNMEIPGGA 707
                     :.|.:.::.. ||.:....               |...|||.|      :|:.|  
Mouse   232 ---------QKPGIFVSHV-KPGSLSAE---------------VGLETGDQI------VEVNG-- 263

  Fly   708 VNRYIATQGPLASTTTDFWRMVQQESSHLL-----VMLTTVMESGRQKCHQYWPVTGEELQLAEG 767
                           .||..:..:|:.::|     :.::.|..:||:                  
Mouse   264 ---------------IDFTNLDHKEAVNVLKSSRSLTISIVAGAGRE------------------ 295

  Fly   768 FSVRCLSEKPDETGSFVFREFVLKDKHEQRHIHHMQYLAWPDHCVPSDPNLFLEFTERVRAARNR 832
                                                              ||:...||:..||.|
Mouse   296 --------------------------------------------------LFMTDRERLEEARQR 310

  Fly   833 TLLQEIEESLKQVRL-MDADADADENGGLMRERKCAASNGATPEDE 877
            .|  :.:|.|.|.|| |:::....|...:.|:|:...:..|..|:|
Mouse   311 EL--QRQELLMQKRLAMESNKILQEQQEMERQRRKEIAQKAAEENE 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010
FA 333..369 CDD:285894
PDZ_signaling 502..589 CDD:238492 24/93 (26%)
Y_phosphatase 666..955 CDD:278528 34/218 (16%)
PTPc 668..955 CDD:238006 34/216 (16%)
Ush1cNP_710143.2 N-terminal domain. /evidence=ECO:0000250|UniProtKB:Q9Y6N9 1..86 8/36 (22%)
harmonin_N 2..80 CDD:259819 7/30 (23%)
PDZ_signaling 85..165 CDD:238492 22/81 (27%)
Mediates interaction with MYO7B. /evidence=ECO:0000250|UniProtKB:Q9Y6N9 194..833 45/279 (16%)
PDZ_signaling 209..289 CDD:238492 19/127 (15%)
Cgr1 <309..>358 CDD:281823 14/48 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..688
PDZ_signaling 751..838 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 890..910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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