DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptpmeg and farp2

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:XP_009300696.1 Gene:farp2 / 567490 ZFINID:ZDB-GENE-030131-2993 Length:1051 Species:Danio rerio


Alignment Length:516 Identity:174/516 - (33%)
Similarity:246/516 - (47%) Gaps:80/516 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VTVLFLDDITHTFRIEKRAKGSELLDQVFQYLELSERDYFGLLFPQKPGDVVRWVDAQKQFKKQC 100
            :.|..||:....:.:|.:|.|..||..||:.:.|.|.|||||.|.....:.| |:|..|...|| 
Zfish    53 IRVQGLDEAQEFYELESKADGQLLLSDVFRRINLIESDYFGLEFQNLQMNWV-WLDPSKLIVKQ- 115

  Fly   101 SSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGKLPCSSNTQCLLASYTVQ 165
                :......|....||||..||.:||||||||.|.|||||::|.|:|.|:.||..||||:.||
Zfish   116 ----VRRPMNTLFRLSVKFFPPDPGQLQEEFTRYLFSLQIKRDLLDGRLSCTENTAALLASHLVQ 176

  Fly   166 SELGDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLHRGQLPADAEYNYLEHAKRLELYGID 230
            ||:||::.|..:........|.|.:  ..:.|:.|||:.|.||.||::::..||.|::||::|:.
Zfish   177 SEIGDYDDLADREFLKMNKLLPCQE--HVQEKIMELHRRHTGQTPAESDFQVLEIARKLEMFGVR 239

  Fly   231 LHRATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLRREPSENYDTLLG 295
            .|.|.|..|.::.|.|:.:||.|||...::|||:|||:.|:|||||.|.|:|..|....:...|.
Zfish   240 FHPAADREGTKINLAVAHMGLQVFQGHTKINTFNWSKIRKLSFKRKRFLIKLHPEVHGPHQDTLE 304

  Fly   296 FGMSSHKHAKALWKSCVEHHSFFR-LKRPHRLSRFLNISLGSKFYYSGRTELQAVQESKQRGRIH 359
            |.|.|....|..||:||||||||| |.:|...|:.:..|.||.|.|||||:.|.|:..:..|...
Zfish   305 FLMGSRDQCKIFWKNCVEHHSFFRLLDQPQPKSKAIFFSRGSSFRYSGRTQKQLVEYVRDSGLRR 369

  Fly   360 KVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQHSGSESANSHNNGKPAGAGT-------------- 410
            ..:.|..||..:      .|...:...|.|..|.::|..:|   .|..:.|              
Zfish   370 TPYQRRNSKIRM------STRSLASDVPKQNLSFNDSLRTH---IPPSSITASFQSLHAPSVSMR 425

  Fly   411 ------ILTITKTSR-----PHDNKVTSKEADSMPRKAWEQQ-----------SDEYDIQLDVGF 453
                  :|.:.:|..     |...|....:.:|....|:...           :|:..:.|...|
Zfish   426 AETPNQLLHLHQTQHQPLRAPSPMKQDPIKTNSQSTYAFPDSIAIDSPQLSPFNDKGPLCLSPSF 490

  Fly   454 IEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQPESGSDLITIRLQADEQGR 514
             :..|......:|||:        .||||      :.||           |.||..||:||
Zfish   491 -QMSTLSLPGQAPSPL--------QSPIL------NEVG-----------TARLDEDEEGR 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 79/195 (41%)
FERM_N 38..102 CDD:286467 24/63 (38%)
FERM_M 125..232 CDD:278785 48/106 (45%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 44/94 (47%)
FA 333..369 CDD:285894 14/35 (40%)
PDZ_signaling 502..589 CDD:238492 7/13 (54%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
farp2XP_009300696.1 B41 53..241 CDD:214604 79/195 (41%)
FERM_N 55..118 CDD:286467 24/68 (35%)
FERM_M 138..241 CDD:278785 48/104 (46%)
FERM_C_FARP1-like 228..348 CDD:270014 54/119 (45%)
FA 341..382 CDD:285894 15/46 (33%)
RhoGEF 537..720 CDD:279015
PH1_FARP1-like 747..861 CDD:269928
PH 755..857 CDD:278594
PH2_FARP1-like 933..1030 CDD:270055
PH 938..1031 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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