DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptpmeg and lnx1

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:XP_005160562.1 Gene:lnx1 / 561226 ZFINID:ZDB-GENE-030131-9439 Length:769 Species:Danio rerio


Alignment Length:550 Identity:116/550 - (21%)
Similarity:179/550 - (32%) Gaps:187/550 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 SGMQLLCDQTTEAERKVGELHKLHRGQLPADAEYNYLEHAKRL----ELYGIDLHRATDSNGKEL 242
            ||..:..|.|.|.:       .|....:||:.|...|.....|    |:..|.:.||....    
Zfish   256 SGTAVANDTTEERD-------NLRNANIPAEGELFALPQLHHLIPDGEVTSIKITRADPCE---- 309

  Fly   243 QLGVSAVG-------------------------LLVFQHSLRVNTFSWSKM----VKVSFKRKDF 278
            .|.:|.||                         ||.....|:||....|.:    ...:.|:...
Zfish   310 PLAISIVGGNETPLVRILIQDIYREGVIARDGRLLPGDMILKVNGIDISNVPHCYAVAALKQPCT 374

  Fly   279 FIQLR--REPSENYDTLLGFGMSSHKHAKA-------------------------------LWKS 310
            .::|.  ||....|        .||.|:..                               |.:.
Zfish   375 LLRLTVLREQRHRY--------RSHHHSPTEAFPAHTATIRDDSLHVVLVKRAPDEQLGIKLVRR 431

  Fly   311 CVEHHSF-FRL------KRPHRL---SRFLNISLGSKFYYSGRTELQAVQESKQRGRIHKVFVRS 365
            ..||..| |.|      .|..||   .|.|.|: |....| |..|..|:.......|:|.:..|.
Zfish   432 PDEHGVFIFHLLEGGLAARDGRLRVDDRVLAIN-GHDLRY-GAPEHAALLIQASEDRVHFIVSRQ 494

  Fly   366 ---PSKRLLGAAGGVGTSGSSGGTPMQ-QHSGSESANSHNNGKPAGAGTILTITKTSRPHDNKVT 426
               |:..:|..|.. ...|....:|:. :|:..:|..     |||.....:|:.|  .|||: :.
Zfish   495 THIPAPDILQEAPW-NMEGPPPYSPVDIEHTLLDSCQ-----KPACYEKTVTLLK--EPHDS-LG 550

  Fly   427 SKEADSMPRKAWE---------------QQSD--EYDIQLDVGFIE-------QCTRRFESASPS 467
            ...|..|..:.|:               |:..  :.||.|:|..::       :.....::.| |
Zfish   551 MTVAGGMSSRGWDLPVYVTNVDPNGVVGQEGSIRKGDILLNVNGVDLTGVTRSEAVANLKNTS-S 614

  Fly   468 PM--------PPAYSS-----GQHSPILL-PTTIADAVGHQQPESGSDLI--------------- 503
            |:        ||..||     ..|||..| |::..|.   :.|....|..               
Zfish   615 PVVLQVLEMRPPNESSLDCMPPLHSPCALSPSSPGDV---KLPPPNDDYAPLWVSWLQLPRHLYC 676

  Fly   504 --TIRLQADEQGRYGFNVKGG---VDLSLPVQVSKVVPHTPA-----DRCTPRVCEGDEVLMING 558
              .|.|:....|..||::.||   ::.:....:..:|..|||     .||      ||.:|.:||
Zfish   677 CKDIVLRRSTSGSLGFSIVGGQEELNCNQSFFIRSIVEGTPAYNDGRIRC------GDILLEVNG 735

  Fly   559 RDVHGLRHEQVVAMIRDCRHQASGELLLTV 588
            :...|:.|..:|.::::.|    |.:.||:
Zfish   736 KSTWGMTHTALVRLLKELR----GRITLTI 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 13/53 (25%)
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785 13/53 (25%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 26/156 (17%)
FA 333..369 CDD:285894 9/38 (24%)
PDZ_signaling 502..589 CDD:238492 25/111 (23%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
lnx1XP_005160562.1 RING 57..93 CDD:214546
PDZ_signaling 297..381 CDD:238492 15/87 (17%)
PDZ_signaling 411..491 CDD:238492 19/81 (23%)
PDZ_signaling 536..621 CDD:238492 16/88 (18%)
DegQ <548..621 CDD:223343 11/74 (15%)
PDZ_signaling 678..762 CDD:238492 25/93 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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