DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptpmeg and fgd4a

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001171404.1 Gene:fgd4a / 556216 ZFINID:ZDB-GENE-050420-347 Length:728 Species:Danio rerio


Alignment Length:654 Identity:115/654 - (17%)
Similarity:212/654 - (32%) Gaps:197/654 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 RGRIHKVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQHSGSESAN--SHNNGKPAGAGTILTITKT 417
            :||:..:..|....|        .|.|...|||.:|.|.|.:.:  ..|..:|...      |..
Zfish    12 KGRVSNLISRFEENR--------HTDGRREGTPPKQVSRSPNCSPPRKNYQRPREQ------TSD 62

  Fly   418 SRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPPAYSSGQHSPIL 482
            |.||       .|...|.....:.:.:.|.:.|:          |..:.:|:|.|          
Zfish    63 SSPH-------HALKPPNGVLAKMNRDRDRERDM----------EGVTHAPVPIA---------- 100

  Fly   483 LPTTIADAVGHQQPESGSDLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVPHTPADRCTPRV 547
                                     :.::||....:   .|||                  |.|.
Zfish   101 -------------------------RINKQGLLNGD---SVDL------------------TKRE 119

  Fly   548 CEGDEVLMINGRDVH-GLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEPLYQYVPESD 611
            ...:|  .::..||| ....|:.....|....|:....:.::..|:..    .|:.||:...|  
Zfish   120 ITEEE--CVDSPDVHLNQAKEEEEQEKRKVSEQSDIVRMNSIPEQKET----NEQKLYKIANE-- 176

  Fly   612 EIGSHSNLLDGDALFTQSLLLLSDGLASGALLAQYELMYRKNPDLAITEARKPANAPKNRYRDIS 676
                   ||..:..:...|.||.            ::.|.|    .:.||||          |..
Zfish   177 -------LLQTEKAYVARLNLLD------------KVFYTK----LMEEARK----------DTF 208

  Fly   677 PYDCTRVSLVNSLTGDYINANYVNMEIPG--GAVNRYIATQ--GPLASTTTDFWRMVQQ---ESS 734
            |.|..: |:.:::|.  |||.:....:|.  ..:..:.:|.  |.:....|.|.:|..:   ...
Zfish   209 PVDVVK-SIFSNITS--INAFHSQFLLPDLEKRMGEWTSTPRIGDILQKLTPFLKMYAEYVRNFD 270

  Fly   735 HLLVMLTTVMESGRQKCHQYWPVTGEELQLAEGFSVRCLSEKPDETGSFVFREFVLK-----DKH 794
            |.:.:|       :|:..:..|.....|.:          :..:..|:...:..:|:     .::
Zfish   271 HAMDLL-------KQRIDRSPPFKAIILDI----------QSQEVCGNLTLQHHMLEPVQRVPRY 318

  Fly   795 EQRHIHHMQYLAWPDHCVPSDPNLFLEF--------TERVRAARNRTLLQEIEESL-KQVRLMDA 850
            |.....:::.|. |:|....|....||.        ...:|...|...|.||.|.| ::..:::.
Zfish   319 EMLLKDYLKKLP-PEHMDRRDAEKSLEIIGMAATHSNTAIRKTENLKKLLEIYEMLGEEEDIVNP 382

  Fly   851 DADADENGGLMRERKCAASNGATPEDETPVSTSVHQCISAANPPVIVHCSAGIGRTGVLILMDTA 915
            ..:..:.|.::   |.||.|          ::::.:.:...| .::::|.......|....:.|.
Zfish   383 SNELIKEGHIL---KLAARN----------TSAMDRYLFLFN-NMLLYCVPKFSLVGQKFTVRTR 433

  Fly   916 LAL--MEAREPV---YPLDI-----VRTMRDQRACMVQNVSQYRFVCECICAAYMKISRSSAAIN 970
            :.:  |..:|..   ||...     .||:..|.:..:...|..:...|.|..:..|.....:||.
Zfish   434 IGIEGMNVKETFNEDYPHTFQVSGKERTLELQASSKLDKESWIKAFTETIDISLQKNETFKSAIK 498

  Fly   971 DDED 974
            |.|:
Zfish   499 DTEE 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010
FA 333..369 CDD:285894 3/13 (23%)
PDZ_signaling 502..589 CDD:238492 14/87 (16%)
Y_phosphatase 666..955 CDD:278528 53/319 (17%)
PTPc 668..955 CDD:238006 53/317 (17%)
fgd4aNP_001171404.1 RhoGEF 173..346 CDD:279015 40/228 (18%)
PH 386..483 CDD:278594 18/110 (16%)
PH1_FDG4 386..479 CDD:275434 17/106 (16%)
FYVE_FGD1_2_4 516..580 CDD:277280
PH2_FGD1-4 601..703 CDD:270056
PH 609..703 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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